Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SCIM_RS07350 Genome accession   NC_018073
Coordinates   1508398..1510377 (-) Length   659 a.a.
NCBI ID   WP_003076037.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503398..1515377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07330 (SCIM_1321) amiF 1503592..1504515 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SCIM_RS07335 (SCIM_1322) amiE 1504526..1505593 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07340 (SCIM_1323) amiD 1505602..1506528 (-) 927 WP_003075765.1 oligopeptide ABC transporter permease OppC Regulator
  SCIM_RS07345 (SCIM_1324) amiC 1506528..1508024 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SCIM_RS07350 (SCIM_1325) amiA3 1508398..1510377 (-) 1980 WP_003076037.1 peptide ABC transporter substrate-binding protein Regulator
  SCIM_RS07355 (SCIM_1326) amiA3 1510574..1512550 (-) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator
  SCIM_RS07360 (SCIM_1327) - 1512709..1513398 (-) 690 WP_014829775.1 B3/4 domain-containing protein -
  SCIM_RS07365 (SCIM_1328) - 1513621..1515234 (-) 1614 WP_003075819.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73370.17 Da        Isoelectric Point: 8.9564

>NTDB_id=51889 SCIM_RS07350 WP_003076037.1 1508398..1510377(-) (amiA3) [Streptococcus intermedius JTH08]
MKKSKIIALTAVALLATGTLAACSGSKTGSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSAVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSILYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDHIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTNDKNFGELVKEKLVGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDSGKNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDKPVTQDQYKKAMTKWN
KERSKSNKKVQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=51889 SCIM_RS07350 WP_003076037.1 1508398..1510377(-) (amiA3) [Streptococcus intermedius JTH08]
ATGAAGAAAAGTAAAATCATTGCCTTAACGGCTGTTGCCTTACTCGCGACGGGGACATTAGCGGCTTGTTCTGGTTCTAA
AACAGGTTCTAGTAACAAAACGTTTTCGTATGTTTATGAACAAGATCCGGATAATCTAGATTATCTGACAACTGGGAAGG
CCTCTACTTCAAACATTACAAGTAACGTCATTGATGGCCTCTTGGAAAATGACCGTTATGGGAACTTAATTCCTTCTGTG
GCAAAAGATTGGACCGTCTCTAAAGACGGCTTGACTTACACTTACAAACTTCGCAAGGGAGTTAAATGGTATACTTCAGA
AGGGGAAGAGTATGCAGAAGTTAAAGCGCAAGACTTTGTGACAGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCCA
TTTATTTGGTGCAAGATTCCATTAAAGGTTTGGATGCTTATATGAAAGGTGAAAATAAAGATTTTTCTGCTGTTGGTATT
AAAGCAGTTGATGATTATACCGTCCAATACACGCTTAATCGACCAGAAAGCTTTTGGAACTCGAAAACAACAATGGGAGT
TTTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCGCAAGCAACAGATCCATCTAGTATTCTTT
ACAATGGACCTTACTTGCTAAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTATTGGGATAAG
AAAAACGTGCACATTGATCACATCAAGTTATCTTACTATGATGGTCAGGATCAGGATAAACTGGCTAAAGGATTTAGCGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACCAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCGCAAGATGCAACCACTTATCTAGTGGCTACAAACATTGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCGCCAACTTTTG
TTCAAACAAATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTTGGTTACGATGAAAGTTGGAAAGATGTCAAT
TTAAATGATGCGCAAGACGGGCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCTAAAGCCAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCGATTCACATTGATATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAGAATCTTGGCAAAGAAAATGTTGTGATTGACATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCTGCTGCAGAGGATTGGGATCTTTCAGACAATGTTGGTTGGAGTCCAGATTTCCA
AGATCCATCTACTTATCTTGATGTCATCAAGCCTTCAAGTGGTGAAAATACTAAGACTTATCTAGGATTTGATTCAGGTA
AAAATAATGCTGCTGCGGCACAAGTTGGTATGAATGAATATGAAAAATTACTGAATGAGGCCGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCTCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATAAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGTTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.818

100

0.619
  amiA3 Streptococcus thermophilus LMG 18311

61.212

100

0.613
  amiA Streptococcus salivarius strain HSISS4

60.909

100

0.61

Multiple sequence alignment