Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SCIM_RS07330 Genome accession   NC_018073
Coordinates   1503592..1504515 (-) Length   307 a.a.
NCBI ID   WP_003074407.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498592..1509515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07315 (SCIM_1318) - 1500161..1501615 (+) 1455 WP_003076157.1 sucrose-6-phosphate hydrolase -
  SCIM_RS07320 (SCIM_1319) - 1501596..1502561 (+) 966 WP_003075902.1 LacI family DNA-binding transcriptional regulator -
  SCIM_RS07325 (SCIM_1320) - 1502647..1503465 (-) 819 WP_003076013.1 Cof-type HAD-IIB family hydrolase -
  SCIM_RS07330 (SCIM_1321) amiF 1503592..1504515 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SCIM_RS07335 (SCIM_1322) amiE 1504526..1505593 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07340 (SCIM_1323) amiD 1505602..1506528 (-) 927 WP_003075765.1 oligopeptide ABC transporter permease OppC Regulator
  SCIM_RS07345 (SCIM_1324) amiC 1506528..1508024 (-) 1497 WP_003074402.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34811.89 Da        Isoelectric Point: 6.1198

>NTDB_id=51885 SCIM_RS07330 WP_003074407.1 1503592..1504515(-) (amiF) [Streptococcus intermedius JTH08]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=51885 SCIM_RS07330 WP_003074407.1 1503592..1504515(-) (amiF) [Streptococcus intermedius JTH08]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAAGTAAAAGATATTA
TTCATGAGGTAGGGCTGTTGTCAGAGCATTTAACTCGCTATCCGCATGAATTCTCGGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTATT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCGGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86

Multiple sequence alignment