Detailed information NTG0051873

Bioinformatically predicted

Overview

• Name: dprA/cilB/dalA
• Type: Machinery gene
• Locus tag: SCIM_RS04880
• Genome accession: NC_018073
• Coordinates: 1008945..1009787 (-)
• Length: 280 a.a.
• NCBI ID: WP_003076620.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1003945..1014787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS04865 (SCIM_0873)	trmFO	1004788..1006122 (-)	1335	WP_003076323.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
SCIM_RS04870 (SCIM_0874)	-	1006216..1006710 (-)	495	WP_003076981.1	hypothetical protein	-
SCIM_RS04875 (SCIM_0875)	topA	1006766..1008859 (-)	2094	WP_014829675.1	type I DNA topoisomerase	-
SCIM_RS04880 (SCIM_0876)	dprA/cilB/dalA	1008945..1009787 (-)	843	WP_003076620.1	DNA-processing protein DprA	Machinery gene
SCIM_RS04885 (SCIM_0877)	-	1009870..1010427 (-)	558	WP_003076878.1	sugar O-acetyltransferase	-
SCIM_RS04890 (SCIM_0878)	-	1010516..1011292 (-)	777	WP_003076831.1	ribonuclease HII	-
SCIM_RS04895 (SCIM_0879)	ylqF	1011279..1012130 (-)	852	WP_003076572.1	ribosome biogenesis GTPase YlqF	-
SCIM_RS04900 (SCIM_0880)	rpsU	1012544..1012720 (-)	177	WP_000048054.1	30S ribosomal protein S21	-
SCIM_RS04905 (SCIM_0881)	-	1012869..1013207 (-)	339	WP_003072637.1	ATP cone domain-containing protein	-

Sequence

Protein

• Length: 280 a.a.
• Molecular weight: 31173.69 Da
• Isoelectric Point: 5.4063

>NTDB_id=51873 SCIM_RS04880 WP_003076620.1 1008945..1009787(-) (dprA/cilB/dalA) [Streptococcus intermedius JTH08]
MNNFDIYKLKEAGLTNQQVINVLEYAEIHEKDLSAKDMAVVSECRNPALFIEKYLQLDDDLLRQEFEKFPSFSILDDVYP
WDLSEIYNPPVLLFYKGNLDLLKLPKVAVVGSRNSSRVGSQSVQKIIKELNNELVIVSGLARGIDTSAHMAALQNGGRTI
AVIGTGLDVFYPRANKKLQSYLGEHHLVLSEYGPEAEPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGRSDGCHHLIQEGAKCITSGSDVLSEFQF

Nucleotide

• Length: 843 bp

>NTDB_id=51873 SCIM_RS04880 WP_003076620.1 1008945..1009787(-) (dprA/cilB/dalA) [Streptococcus intermedius JTH08]
ATGAATAATTTTGATATTTATAAATTAAAAGAAGCCGGCTTGACAAACCAACAAGTTATCAATGTATTAGAATATGCTGA
AATACATGAAAAAGATTTGTCTGCCAAAGACATGGCAGTTGTTTCCGAATGCCGTAATCCTGCTCTTTTTATTGAAAAAT
ATTTGCAGTTAGATGATGATTTATTACGTCAAGAATTTGAGAAATTCCCATCTTTTTCTATCTTGGACGATGTATATCCT
TGGGATTTGAGTGAAATTTATAATCCACCCGTTCTTCTTTTTTATAAAGGTAATTTGGATTTGCTAAAATTACCTAAAGT
GGCTGTTGTAGGAAGTCGAAATAGTAGCCGAGTAGGCAGTCAATCTGTTCAAAAGATTATTAAAGAGCTAAACAATGAAT
TGGTTATTGTGAGTGGTTTAGCACGCGGAATTGATACCTCGGCTCACATGGCAGCATTGCAAAATGGTGGTCGAACAATT
GCAGTTATCGGAACGGGCCTAGATGTGTTTTATCCAAGGGCGAATAAGAAACTCCAATCGTATTTGGGAGAACATCATCT
AGTGCTTAGTGAGTATGGTCCTGAAGCAGAGCCATTAAAATTTCATTTTCCAGAGCGTAATCGGATTATAGCAGGATTGT
GTAGAGGGGTTATTGTCGCTGAAGCTAAAATGCGCTCAGGCAGCCTTATTACTTGTGAGCGAGCAATGGAAGAAGGGCGA
GATGTATTTGCTATTCCAGGGTCAATTTTAGATGGAAGAAGTGATGGCTGTCATCATTTGATTCAGGAGGGAGCAAAATG
TATCACATCAGGGTCTGACGTACTTTCTGAATTCCAGTTTTAA

Domains

Predicted by InterproScan.

• DNA processing protein A sterile alpha motif domain (SAM_DprA) (1-60)

• DNA recombination-mediator protein A (DNA_processg_A) (73-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	76.786	100	0.768
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	76.429	100	0.764
dprA/cilB/dalA	Streptococcus pneumoniae D39	76.429	100	0.764
dprA/cilB/dalA	Streptococcus pneumoniae R6	76.429	100	0.764
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	76.429	100	0.764
dprA/cilB/dalA	Streptococcus mitis SK321	76.071	100	0.761
dprA	Streptococcus mutans UA159	65.357	100	0.654
dprA	Lactococcus lactis subsp. cremoris KW2	57.143	100	0.571
dprA	Legionella pneumophila strain ERS1305867	43.154	86.071	0.371
dprA	Bacillus subtilis subsp. subtilis str. 168	48.095	75	0.361