NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	JEM45_RS07675	Genome accession	NZ_CP066224
Coordinates	1487606..1488106 (+)	Length	166 a.a.
NCBI ID	WP_026867103.1	Uniprot ID	A0A7T4X0H3
Organism	Jeotgalicoccus sp. ATCC 8456
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1482606..1493106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JEM45_RS07645 (JEM45_07645)	-	1483166..1483978 (+)	813	WP_026867098.1	ParB/RepB/Spo0J family partition protein	-
JEM45_RS07650 (JEM45_07650)	-	1484079..1484852 (+)	774	WP_051220540.1	ParB/RepB/Spo0J family partition protein	-
JEM45_RS07655 (JEM45_07655)	-	1484874..1485806 (+)	933	WP_235678847.1	mechanosensitive ion channel family protein	-
JEM45_RS07660 (JEM45_07660)	-	1485810..1485989 (+)	180	WP_026867100.1	DUF951 domain-containing protein	-
JEM45_RS07665 (JEM45_07665)	ychF	1486008..1487108 (+)	1101	WP_026867101.1	redox-regulated ATPase YchF	-
JEM45_RS07670 (JEM45_07670)	rpsF	1487277..1487579 (+)	303	WP_026867102.1	30S ribosomal protein S6	-
JEM45_RS07675 (JEM45_07675)	ssbA	1487606..1488106 (+)	501	WP_026867103.1	single-stranded DNA-binding protein	Machinery gene
JEM45_RS07680 (JEM45_07680)	modA	1488327..1489256 (+)	930	WP_026867104.1	molybdate ABC transporter substrate-binding protein	-
JEM45_RS07685 (JEM45_07685)	modA	1489352..1490146 (+)	795	WP_051220541.1	molybdate ABC transporter substrate-binding protein	-
JEM45_RS07690 (JEM45_07690)	modB	1490127..1490816 (+)	690	WP_026867106.1	molybdate ABC transporter permease subunit	-
JEM45_RS07695 (JEM45_07695)	-	1490986..1491312 (+)	327	WP_026867107.1	PadR family transcriptional regulator	-
JEM45_RS07700 (JEM45_07700)	-	1491314..1492087 (+)	774	WP_026867108.1	hypothetical protein	-
JEM45_RS07705 (JEM45_07705)	rpsR	1492227..1492466 (+)	240	WP_017547433.1	30S ribosomal protein S18	-
JEM45_RS07710 (JEM45_07710)	-	1492520..1492945 (-)	426	WP_026867109.1	DUF2188 domain-containing protein	-

Sequence

Protein

Download Length: 166 a.a. Molecular weight: 18367.10 Da Isoelectric Point: 5.2564

                                >NTDB_id=518580 JEM45_RS07675 WP_026867103.1 1487606..1488106(+) (ssbA) [Jeotgalicoccus sp. ATCC 8456]

MLNRVVLVGRLTKDPELRVSQNNIAVANFNLAVNRPFTNQNGERGADFINCVVFRKQAENVNQYVKKGSLVGIDGRIQTR

NYENKDGQRVYVTEVVCESVQFLEPKNSGNQSQSNYGNNSTDAYADAYGSGNQSTGQSQGRQQPKEDNPFANSKGPVDIS

DDDLPF

Nucleotide

Download Length: 501 bp

                                >NTDB_id=518580 JEM45_RS07675 WP_026867103.1 1487606..1488106(+) (ssbA) [Jeotgalicoccus sp. ATCC 8456]

ATGCTAAACCGTGTGGTTTTAGTTGGTCGTTTAACAAAAGACCCAGAACTAAGAGTCAGTCAAAATAATATCGCTGTCGC

TAATTTCAACTTAGCTGTCAATCGTCCTTTTACTAACCAAAATGGTGAAAGAGGTGCGGACTTTATCAACTGTGTTGTTT

TCAGAAAACAAGCTGAGAACGTTAACCAGTATGTTAAGAAAGGCAGTCTTGTTGGTATCGACGGAAGAATACAAACTCGT

AATTACGAGAACAAAGACGGACAAAGAGTATATGTAACTGAAGTTGTGTGTGAAAGTGTTCAGTTCTTAGAGCCTAAGAA

TAGCGGTAATCAATCTCAAAGCAATTATGGAAATAACTCAACGGACGCATATGCAGATGCATATGGATCTGGCAATCAGT

CGACTGGTCAAAGCCAGGGACGTCAACAGCCAAAAGAGGATAATCCATTTGCGAACTCTAAAGGTCCGGTAGACATCAGC

GATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7T4X0H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	61.047	100	0.633
ssb	Latilactobacillus sakei subsp. sakei 23K	52.047	100	0.536
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.855	0.373
ssb	Glaesserella parasuis strain SC1401	33.708	100	0.361
ssb	Neisseria meningitidis MC58	33.149	100	0.361
ssb	Neisseria gonorrhoeae MS11	33.149	100	0.361

Detailed information NTG0518580