Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   JDY60_RS07280 Genome accession   NZ_CP066172
Coordinates   1531121..1531423 (-) Length   100 a.a.
NCBI ID   WP_200370534.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526121..1536423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS07250 (JDY60_07250) rnpA 1526909..1527280 (-) 372 WP_000748120.1 ribonuclease P protein component -
  JDY60_RS07255 (JDY60_07255) - 1527430..1528620 (-) 1191 WP_049490206.1 acetate kinase -
  JDY60_RS07260 (JDY60_07260) comYH 1528671..1529624 (-) 954 WP_049490205.1 class I SAM-dependent methyltransferase Machinery gene
  JDY60_RS07265 (JDY60_07265) - 1529683..1530273 (-) 591 WP_049490204.1 class I SAM-dependent methyltransferase -
  JDY60_RS07270 (JDY60_07270) comGG/cglG 1530306..1530719 (-) 414 WP_070568123.1 competence type IV pilus minor pilin ComGG Machinery gene
  JDY60_RS07275 (JDY60_07275) comGF/cglF 1530697..1531158 (-) 462 WP_070568120.1 competence type IV pilus minor pilin ComGF Machinery gene
  JDY60_RS07280 (JDY60_07280) comGE/cglE 1531121..1531423 (-) 303 WP_200370534.1 competence type IV pilus minor pilin ComGE Machinery gene
  JDY60_RS07285 (JDY60_07285) comGD/cglD 1531386..1531820 (-) 435 WP_200370535.1 competence type IV pilus minor pilin ComGD Machinery gene
  JDY60_RS07290 (JDY60_07290) comGC/cglC 1531783..1532106 (-) 324 WP_200370536.1 competence type IV pilus major pilin ComGC Machinery gene
  JDY60_RS07295 (JDY60_07295) comGB/cglB 1532108..1533124 (-) 1017 WP_000355379.1 competence type IV pilus assembly protein ComGB Machinery gene
  JDY60_RS07300 (JDY60_07300) comGA/cglA/cilD 1533072..1534013 (-) 942 WP_000249575.1 competence type IV pilus ATPase ComGA Machinery gene
  JDY60_RS07305 (JDY60_07305) - 1534083..1534448 (-) 366 WP_000286396.1 DUF1033 family protein -
  JDY60_RS07310 (JDY60_07310) nagA 1534603..1535754 (-) 1152 WP_001134447.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11168.13 Da        Isoelectric Point: 7.0157

>NTDB_id=518074 JDY60_RS07280 WP_200370534.1 1531121..1531423(-) (comGE/cglE) [Streptococcus oralis strain SF100]
MEKLNALRKLKIKAVILLEAVVALAIFASIATLLLGQIQKNRQEEAEILQKEEVLRVAKMALQTGQNQVNINGVEIQVFS
SEKGLEVYHGSEKLLDLKEQ

Nucleotide


Download         Length: 303 bp        

>NTDB_id=518074 JDY60_RS07280 WP_200370534.1 1531121..1531423(-) (comGE/cglE) [Streptococcus oralis strain SF100]
ATGGAAAAATTAAACGCATTAAGGAAACTAAAAATTAAGGCAGTGATCTTACTAGAAGCAGTAGTAGCGCTAGCCATATT
TGCCAGTATTGCAACCCTCCTCTTGGGACAAATCCAGAAAAATAGGCAGGAAGAGGCAGAAATCTTGCAAAAGGAAGAAG
TCTTGCGTGTAGCGAAGATGGCTCTGCAGACAGGTCAAAATCAGGTAAACATAAACGGAGTGGAGATTCAGGTGTTTTCT
AGTGAAAAGGGATTGGAGGTCTACCATGGTTCAGAGAAGTTGCTGGATCTTAAAGAGCAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(16-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus mitis NCTC 12261

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae Rx1

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae D39

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae R6

92.929

99

0.92
  comGE/cglE Streptococcus pneumoniae TIGR4

92.929

99

0.92
  comGE/cglE Streptococcus mitis SK321

91.919

99

0.91
  comYE Streptococcus mutans UA140

42.391

92

0.39
  comYE Streptococcus mutans UA159

42.391

92

0.39