Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   JDY60_RS07260 Genome accession   NZ_CP066172
Coordinates   1528671..1529624 (-) Length   317 a.a.
NCBI ID   WP_049490205.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523671..1534624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS07235 (JDY60_07235) - 1524427..1525050 (-) 624 WP_200370532.1 ribonuclease P -
  JDY60_RS07240 (JDY60_07240) jag 1525106..1526092 (-) 987 WP_070683607.1 RNA-binding cell elongation regulator Jag/EloR -
  JDY60_RS07245 (JDY60_07245) - 1526107..1526934 (-) 828 WP_000728097.1 membrane protein insertase YidC -
  JDY60_RS07250 (JDY60_07250) rnpA 1526909..1527280 (-) 372 WP_000748120.1 ribonuclease P protein component -
  JDY60_RS07255 (JDY60_07255) - 1527430..1528620 (-) 1191 WP_049490206.1 acetate kinase -
  JDY60_RS07260 (JDY60_07260) comYH 1528671..1529624 (-) 954 WP_049490205.1 class I SAM-dependent methyltransferase Machinery gene
  JDY60_RS07265 (JDY60_07265) - 1529683..1530273 (-) 591 WP_049490204.1 class I SAM-dependent methyltransferase -
  JDY60_RS07270 (JDY60_07270) comGG/cglG 1530306..1530719 (-) 414 WP_070568123.1 competence type IV pilus minor pilin ComGG Machinery gene
  JDY60_RS07275 (JDY60_07275) comGF/cglF 1530697..1531158 (-) 462 WP_070568120.1 competence type IV pilus minor pilin ComGF Machinery gene
  JDY60_RS07280 (JDY60_07280) comGE/cglE 1531121..1531423 (-) 303 WP_200370534.1 competence type IV pilus minor pilin ComGE Machinery gene
  JDY60_RS07285 (JDY60_07285) comGD/cglD 1531386..1531820 (-) 435 WP_200370535.1 competence type IV pilus minor pilin ComGD Machinery gene
  JDY60_RS07290 (JDY60_07290) comGC/cglC 1531783..1532106 (-) 324 WP_200370536.1 competence type IV pilus major pilin ComGC Machinery gene
  JDY60_RS07295 (JDY60_07295) comGB/cglB 1532108..1533124 (-) 1017 WP_000355379.1 competence type IV pilus assembly protein ComGB Machinery gene
  JDY60_RS07300 (JDY60_07300) comGA/cglA/cilD 1533072..1534013 (-) 942 WP_000249575.1 competence type IV pilus ATPase ComGA Machinery gene
  JDY60_RS07305 (JDY60_07305) - 1534083..1534448 (-) 366 WP_000286396.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35596.66 Da        Isoelectric Point: 4.3067

>NTDB_id=518071 JDY60_RS07260 WP_049490205.1 1528671..1529624(-) (comYH) [Streptococcus oralis strain SF100]
MDFEKIEQAYTYLLENVHVIQSDLVTNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAISLLLVLVVEELLHKEEISILEIGSGMGILGATFLTSLSKKVDYLGIEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSNGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=518071 JDY60_RS07260 WP_049490205.1 1528671..1529624(-) (comYH) [Streptococcus oralis strain SF100]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCATGTCATCCAAAGTGATTTGGTGACCAA
CTTTTATGATGCCTTGGTAGAGCAAAATAGTATCTATCTAGATGGCGAGACCGAACTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAACGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCGGGACAAACG
GAACCTTTACAGGCCAATCACCAGTTTACACCAGATGCCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGCATTTTGGGGGCTACTTTCTTGACTTCCCTCTCTAAAA
AAGTAGATTACTTAGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCAAGTATGTCAGATGTGATTGGTTTACAG
GCTGGTTTTGTTCAAGGAGATGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAAATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGCCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

58.199

98.107

0.571
  comYH Streptococcus mutans UA159

57.878

98.107

0.568