Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I6I32_RS05590 Genome accession   NZ_CP066041
Coordinates   1137283..1137945 (+) Length   220 a.a.
NCBI ID   WP_198464247.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132283..1142945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS05565 (I6I32_05565) tsf 1132671..1133711 (+) 1041 WP_000808059.1 translation elongation factor Ts -
  I6I32_RS05570 (I6I32_05570) cysK 1133814..1134740 (-) 927 WP_198464244.1 cysteine synthase A -
  I6I32_RS05575 (I6I32_05575) - 1134837..1135280 (-) 444 WP_033584681.1 PH domain-containing protein -
  I6I32_RS05580 (I6I32_05580) - 1135296..1135931 (-) 636 WP_198464245.1 YigZ family protein -
  I6I32_RS05585 (I6I32_05585) comFA/cflA 1135988..1137286 (+) 1299 WP_198464246.1 DEAD/DEAH box helicase Machinery gene
  I6I32_RS05590 (I6I32_05590) comFC/cflB 1137283..1137945 (+) 663 WP_198464247.1 ComF family protein Machinery gene
  I6I32_RS05595 (I6I32_05595) hpf 1138025..1138573 (+) 549 WP_000599111.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6I32_RS05600 (I6I32_05600) - 1138655..1139833 (+) 1179 WP_198464248.1 acetyl-CoA C-acetyltransferase -
  I6I32_RS05605 (I6I32_05605) - 1139990..1141963 (+) 1974 WP_198464249.1 DHH family phosphoesterase -
  I6I32_RS05610 (I6I32_05610) rplI 1141960..1142412 (+) 453 WP_000864211.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25198.17 Da        Isoelectric Point: 7.7677

>NTDB_id=516664 I6I32_RS05590 WP_198464247.1 1137283..1137945(+) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_1075]
MNCLLCGQTIKSDLTFSHLLLFKNENNYLCSDCESTFEKIDEDYCPNCMKTGVSTKCQDCKLWCKEGIRVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLAEELKKYRGYQFVLIPLSPERLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=516664 I6I32_RS05590 WP_198464247.1 1137283..1137945(+) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_1075]
ATGAATTGTTTACTATGTGGCCAGACAATAAAGAGTGACTTGACATTTAGTCACCTCTTGCTGTTTAAGAATGAGAACAA
CTATCTTTGTTCAGATTGTGAGTCTACTTTTGAGAAGATTGATGAGGACTATTGTCCAAACTGTATGAAAACAGGCGTGT
CAACTAAGTGTCAAGACTGTAAACTTTGGTGTAAAGAAGGAATTCGGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTAGATATAAGTTTGATGGAGATTTTTTGCTTAGAAAAGTTTTTGCTTCTGTTCTTGCTGA
GGAGCTGAAAAAGTATAGAGGATATCAATTTGTGTTGATTCCCCTAAGCCCTGAAAGATTGCTTGAGAGGGGGTTTAACC
AAGTCGAGGGTTTGGTTGAGGCAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGCGCTAGTTCTTCT
AAAAGCCGTTTGGAAAGGTTAGCTACTGAAATTCCATTTTTTATTAAAGATGGTATCTCGCTTCCTAAGAAGATTTTGCT
GATTGATGACATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

78.636

100

0.786
  comFC/cflB Streptococcus mitis SK321

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae D39

77.273

100

0.773
  comFC/cflB Streptococcus pneumoniae R6

77.273

100

0.773
  comFC/cflB Streptococcus pneumoniae Rx1

77.273

100

0.773
  comFC/cflB Streptococcus pneumoniae TIGR4

77.273

100

0.773
  comFC Bacillus subtilis subsp. subtilis str. 168

37.281

100

0.386