Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | THIVI_RS11970 | Genome accession | NC_018012 |
| Coordinates | 2712313..2712825 (-) | Length | 170 a.a. |
| NCBI ID | WP_014778854.1 | Uniprot ID | I3YBP2 |
| Organism | Thiocystis violascens DSM 198 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2707313..2717825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THIVI_RS11945 (Thivi_2465) | - | 2707583..2709208 (+) | 1626 | WP_014778851.1 | histidine kinase | - |
| THIVI_RS11950 (Thivi_2466) | - | 2709196..2709852 (+) | 657 | WP_014778852.1 | response regulator transcription factor | - |
| THIVI_RS11955 (Thivi_2467) | - | 2709940..2711049 (-) | 1110 | WP_041447215.1 | IS5 family transposase | - |
| THIVI_RS11965 (Thivi_2469) | - | 2711560..2711922 (+) | 363 | WP_014778853.1 | hypothetical protein | - |
| THIVI_RS11970 (Thivi_2470) | ssb | 2712313..2712825 (-) | 513 | WP_014778854.1 | single-stranded DNA-binding protein | Machinery gene |
| THIVI_RS11975 (Thivi_2471) | - | 2712902..2714338 (-) | 1437 | WP_083845749.1 | MFS transporter | - |
| THIVI_RS11980 (Thivi_2472) | uvrA | 2714437..2717286 (+) | 2850 | WP_014778856.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18299.21 Da Isoelectric Point: 5.7802
>NTDB_id=51647 THIVI_RS11970 WP_014778854.1 2712313..2712825(-) (ssb) [Thiocystis violascens DSM 198]
MAGVNKVILIGNLGADPEVRYMPSGDAVANIRIATSESWKDRNTGEKQERTEWHNVVFFGKIAEIVKQYLHKGSKVYVEG
KLRTRKWQGQDGQDRYTTEVVVDINGTMQMLDSRQGGGSSVPFDDDPSYQSLGGSSRSRAASPAPAPSSGSASGSQGGAS
SVPFDDDIPF
MAGVNKVILIGNLGADPEVRYMPSGDAVANIRIATSESWKDRNTGEKQERTEWHNVVFFGKIAEIVKQYLHKGSKVYVEG
KLRTRKWQGQDGQDRYTTEVVVDINGTMQMLDSRQGGGSSVPFDDDPSYQSLGGSSRSRAASPAPAPSSGSASGSQGGAS
SVPFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=51647 THIVI_RS11970 WP_014778854.1 2712313..2712825(-) (ssb) [Thiocystis violascens DSM 198]
ATGGCAGGCGTGAATAAGGTGATTCTGATCGGGAATCTCGGGGCCGATCCCGAGGTGCGTTACATGCCGAGCGGCGATGC
GGTGGCCAATATCCGCATCGCGACCAGCGAGTCCTGGAAGGATCGCAATACCGGCGAAAAACAGGAGCGGACCGAATGGC
ACAACGTGGTCTTCTTCGGCAAGATCGCGGAGATCGTCAAGCAGTACCTGCACAAGGGCTCGAAGGTCTATGTCGAGGGC
AAGCTGCGCACCCGTAAATGGCAGGGACAGGACGGGCAGGACCGCTATACGACCGAGGTCGTCGTCGACATCAATGGAAC
CATGCAGATGCTGGACAGCCGTCAAGGGGGTGGCTCGTCGGTCCCCTTCGACGACGATCCTTCGTATCAATCCCTTGGCG
GTAGCAGCCGCTCTCGGGCTGCCTCGCCAGCACCTGCACCGTCGAGCGGTTCTGCATCCGGAAGCCAGGGCGGCGCATCC
TCCGTGCCTTTCGACGACGACATTCCTTTTTAA
ATGGCAGGCGTGAATAAGGTGATTCTGATCGGGAATCTCGGGGCCGATCCCGAGGTGCGTTACATGCCGAGCGGCGATGC
GGTGGCCAATATCCGCATCGCGACCAGCGAGTCCTGGAAGGATCGCAATACCGGCGAAAAACAGGAGCGGACCGAATGGC
ACAACGTGGTCTTCTTCGGCAAGATCGCGGAGATCGTCAAGCAGTACCTGCACAAGGGCTCGAAGGTCTATGTCGAGGGC
AAGCTGCGCACCCGTAAATGGCAGGGACAGGACGGGCAGGACCGCTATACGACCGAGGTCGTCGTCGACATCAATGGAAC
CATGCAGATGCTGGACAGCCGTCAAGGGGGTGGCTCGTCGGTCCCCTTCGACGACGATCCTTCGTATCAATCCCTTGGCG
GTAGCAGCCGCTCTCGGGCTGCCTCGCCAGCACCTGCACCGTCGAGCGGTTCTGCATCCGGAAGCCAGGGCGGCGCATCC
TCCGTGCCTTTCGACGACGACATTCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.225 |
100 |
0.582 |
| ssb | Glaesserella parasuis strain SC1401 |
51.366 |
100 |
0.553 |
| ssb | Neisseria gonorrhoeae MS11 |
44.886 |
100 |
0.465 |
| ssb | Neisseria meningitidis MC58 |
44.318 |
100 |
0.459 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
35.556 |
100 |
0.376 |