Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6I17_RS00945 Genome accession   NZ_CP065999
Coordinates   175970..177535 (-) Length   521 a.a.
NCBI ID   WP_003783453.1    Uniprot ID   -
Organism   Kingella denitrificans strain FDAARGOS_1060     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170970..182535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I17_RS00925 (I6I17_00925) - 171342..172307 (-) 966 WP_003783442.1 L-lactate dehydrogenase -
  I6I17_RS00930 (I6I17_00930) - 172398..172580 (-) 183 WP_003783444.1 hypothetical protein -
  I6I17_RS00935 (I6I17_00935) purD 172655..173935 (-) 1281 WP_003783447.1 phosphoribosylamine--glycine ligase -
  I6I17_RS00940 (I6I17_00940) - 174030..175886 (-) 1857 WP_040564844.1 ABC transporter ATP-binding protein -
  I6I17_RS00945 (I6I17_00945) pilA 175970..177535 (-) 1566 WP_003783453.1 signal recognition particle-docking protein FtsY Machinery gene
  I6I17_RS00950 (I6I17_00950) - 177705..178628 (+) 924 WP_050781270.1 ABC transporter ATP-binding protein -
  I6I17_RS00955 (I6I17_00955) - 178925..179752 (+) 828 WP_003783458.1 class I SAM-dependent methyltransferase -
  I6I17_RS00960 (I6I17_00960) - 179840..180271 (-) 432 WP_040564357.1 hypothetical protein -
  I6I17_RS00965 (I6I17_00965) - 180319..180498 (-) 180 WP_040564358.1 hypothetical protein -
  I6I17_RS00970 (I6I17_00970) argG 180646..181977 (-) 1332 WP_003783461.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 55768.35 Da        Isoelectric Point: 4.2747

>NTDB_id=516237 I6I17_RS00945 WP_003783453.1 175970..177535(-) (pilA) [Kingella denitrificans strain FDAARGOS_1060]
MFSFINKLFRKPKDASPTPTNTETAQQPAQPDTTEQQKQPAPAAEANTGSSAAHSGETAEPGVQEAAGEPASEQPAEPVQ
AALSENADEEKQPAPAIEPEMDNAVAENVNQNETKETAAEETAQPETEESAQATEQAAQPDSADEEKQPAPIVETEVDNA
VTENVAQNETTETAAAETAQTETEEPVQAALPKTEAPKAVTEMPPQVQPEEEEPLNWTARLVRGLDKSRNHMAKSLAGVF
GGGKIDEDLYEELETVLLTSDMGIEATEHLMKEVRERVSLRGLKDGKELRQALKEAIYDLLKPLEKPLVLPENGQPFVIM
MAGINGAGKTTSIGKLAKYFQKQGKSVMLAAGDTFRAAAREQLQEWGERNGVVVISQEKGDSAAVCFDAVEAAKARKIDV
VLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDANIGQNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLA
ALASSRAIPVRFIGVGERIDDLRPFNARAFVDALLDEGSLA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=516237 I6I17_RS00945 WP_003783453.1 175970..177535(-) (pilA) [Kingella denitrificans strain FDAARGOS_1060]
ATGTTTAGTTTTATCAATAAATTATTCCGTAAACCCAAAGACGCGTCACCAACACCAACCAATACCGAAACTGCACAACA
GCCTGCCCAACCCGACACGACCGAACAACAAAAGCAGCCTGCACCTGCCGCTGAAGCAAACACAGGCAGCAGCGCGGCGC
ACAGCGGCGAAACCGCAGAACCCGGCGTGCAAGAAGCCGCGGGCGAACCTGCGTCCGAACAACCTGCCGAACCCGTGCAG
GCTGCTTTGTCTGAAAACGCGGATGAAGAAAAGCAGCCTGCACCTGCCATTGAACCCGAAATGGACAACGCCGTTGCGGA
AAATGTAAACCAAAACGAAACCAAAGAAACCGCCGCTGAAGAAACAGCGCAACCCGAAACCGAAGAATCCGCACAAGCCA
CCGAACAGGCTGCCCAACCCGACAGCGCGGATGAAGAAAAGCAGCCTGCACCTATCGTTGAAACCGAAGTGGACAACGCC
GTTACGGAAAATGTAGCCCAAAACGAAACCACAGAAACCGCCGCAGCGGAAACAGCGCAAACTGAAACCGAAGAACCCGT
GCAGGCTGCTTTGCCCAAAACCGAAGCACCCAAAGCCGTTACGGAAATGCCGCCGCAAGTGCAGCCCGAAGAAGAAGAGC
CGCTGAACTGGACGGCGCGGCTGGTGCGCGGATTGGACAAATCGCGCAACCACATGGCCAAATCGCTGGCGGGCGTGTTC
GGCGGCGGCAAAATCGACGAAGATTTGTATGAAGAGCTGGAAACCGTGCTGCTGACCAGCGACATGGGCATCGAAGCGAC
CGAACATTTGATGAAGGAAGTGCGAGAACGCGTGTCGCTGCGTGGCCTGAAAGACGGCAAAGAGCTGCGTCAGGCGCTGA
AAGAAGCGATTTACGATTTGCTCAAACCGCTGGAAAAACCGCTGGTTCTGCCCGAAAACGGCCAGCCTTTCGTCATCATG
ATGGCCGGCATTAACGGCGCGGGTAAAACCACGTCCATCGGCAAGCTGGCCAAATATTTCCAAAAACAAGGCAAAAGCGT
GATGCTGGCGGCGGGCGATACCTTCCGTGCCGCCGCGCGCGAACAGTTGCAGGAATGGGGCGAGCGCAACGGCGTGGTGG
TGATTTCGCAGGAAAAAGGCGATTCTGCCGCCGTGTGCTTCGATGCCGTGGAAGCGGCGAAAGCGCGCAAAATTGATGTG
GTGCTGGCGGACACGGCCGGCCGCCTGCCCACGCAGCTGCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCA
AAAATCCATGCCCGATGCGCCGCATGAGATCATCGTGGTGCTGGATGCGAACATCGGCCAAAACGCCGTGAACCAAGTGG
TGGCGTTTGACGATGCCTTGGGCGTTACCGGCCTTATCGTCACCAAGCTGGACGGCACGGCCAAAGGCGGCGTGTTGGCG
GCATTGGCCAGCAGCCGCGCCATTCCGGTGCGCTTTATCGGCGTGGGCGAGCGTATTGATGATTTGCGGCCGTTCAATGC
GCGCGCGTTTGTCGATGCCCTGCTGGACGAAGGCTCGCTGGCATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(316-515)

SRP54-type protein, helical bundle domain (SRP54_N)

(234-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

75.209

68.906

0.518