Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6I17_RS00800 Genome accession   NZ_CP065999
Coordinates   142028..143221 (-) Length   397 a.a.
NCBI ID   WP_003783392.1    Uniprot ID   F0F0I5
Organism   Kingella denitrificans strain FDAARGOS_1060     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 137028..148221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I17_RS00770 (I6I17_00770) - 138473..138922 (-) 450 WP_003783378.1 DUF441 domain-containing protein -
  I6I17_RS00775 (I6I17_00775) - 138922..139896 (-) 975 WP_003783380.1 polyprenyl synthetase family protein -
  I6I17_RS00780 (I6I17_00780) rpmA 140116..140388 (-) 273 WP_003783384.1 50S ribosomal protein L27 -
  I6I17_RS00785 (I6I17_00785) rplU 140415..140723 (-) 309 WP_094576635.1 50S ribosomal protein L21 -
  I6I17_RS00790 (I6I17_00790) - 140821..141708 (-) 888 WP_003783388.1 polyprenyl synthetase family protein -
  I6I17_RS00795 (I6I17_00795) xseB 141701..141931 (-) 231 WP_003783390.1 exodeoxyribonuclease VII small subunit -
  I6I17_RS00800 (I6I17_00800) dprA 142028..143221 (-) 1194 WP_003783392.1 DNA-processing protein DprA Machinery gene
  I6I17_RS00805 (I6I17_00805) tsaA 143379..144077 (-) 699 WP_050781244.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  I6I17_RS00810 (I6I17_00810) - 144160..144714 (-) 555 WP_003783398.1 outer membrane beta-barrel protein -
  I6I17_RS00815 (I6I17_00815) mnmE 144845..146221 (+) 1377 WP_003783400.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  I6I17_RS00820 (I6I17_00820) gap 146281..147285 (-) 1005 WP_003783401.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 42749.06 Da        Isoelectric Point: 6.4964

>NTDB_id=516236 I6I17_RS00800 WP_003783392.1 142028..143221(-) (dprA) [Kingella denitrificans strain FDAARGOS_1060]
MTETERFAWVQLAFTPYIGAESFTQLIEHCGSAEEALKAPAALVAQLGRYGKQAAAAWHDTDKAKMACEAAFNWEKQPDC
RLLLSCDDDFPMRLKEGLTPPPVLFVRGNADLLRQASVGIVGSRHATPQAMRISADFGRALSERNITVISGMAAGIDTAA
HHGALQGAGSTIAVWGTGIDRIYPQSNQKLAYQIAEQGAIVSEFPLGTRPLAGNFPRRNRLIAGFAQAVLVVEAALESGS
LITARLAGEMGREVMAIPGSIDNPHSKGCHKLIKDGAKLVECLDDILSECPELLQKSMESSASTQLSTKLSTKLSTRKRA
NVSRENKQPALMEIPQQVVAAVEGNSLLAMMGYDPIHPDLLAEKCKLATDEIYAQLTELELDGVVAAMPGGRFQRIK

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=516236 I6I17_RS00800 WP_003783392.1 142028..143221(-) (dprA) [Kingella denitrificans strain FDAARGOS_1060]
ATGACGGAAACAGAACGCTTTGCTTGGGTGCAACTGGCTTTCACGCCGTATATTGGGGCGGAAAGTTTTACACAGCTTAT
CGAACATTGCGGCAGTGCGGAGGAGGCATTGAAGGCTCCGGCGGCTTTGGTGGCGCAACTGGGGCGGTATGGCAAACAGG
CGGCCGCTGCGTGGCACGATACCGACAAAGCCAAAATGGCCTGCGAAGCCGCATTCAACTGGGAAAAGCAGCCCGATTGC
AGGCTGCTTTTGTCGTGCGATGACGATTTTCCCATGCGACTGAAAGAAGGGCTGACACCGCCGCCCGTATTGTTTGTGCG
CGGCAATGCCGATTTGTTGCGGCAGGCGTCGGTCGGCATTGTCGGCAGCCGTCATGCGACACCACAGGCCATGCGGATTT
CGGCCGATTTCGGCCGCGCATTGAGCGAACGGAACATTACCGTGATTTCCGGCATGGCTGCGGGTATCGATACTGCGGCA
CACCACGGCGCTTTGCAAGGTGCAGGCAGCACTATTGCCGTGTGGGGCACGGGCATTGACCGCATTTATCCGCAAAGCAA
TCAGAAATTGGCTTACCAGATTGCCGAACAAGGTGCGATTGTATCGGAATTCCCATTGGGAACGCGCCCTTTGGCCGGTA
ATTTCCCCCGCAGAAACCGATTGATTGCAGGTTTTGCGCAGGCTGTTTTGGTGGTGGAAGCCGCATTGGAAAGCGGTTCG
CTCATCACGGCGCGGCTGGCAGGCGAAATGGGGCGCGAAGTAATGGCTATCCCGGGTTCTATCGACAATCCGCACAGCAA
AGGCTGCCACAAACTGATTAAAGACGGTGCAAAACTGGTGGAGTGCTTGGACGATATTTTGAGTGAATGCCCCGAATTGC
TGCAAAAAAGTATGGAATCAAGCGCATCTACGCAATTATCCACAAAACTATCCACAAAACTATCCACAAGAAAACGGGCG
AATGTTTCACGTGAAAACAAGCAGCCTGCACTGATGGAAATACCACAGCAGGTAGTTGCGGCGGTGGAAGGAAATTCTCT
ACTCGCCATGATGGGATATGACCCTATCCATCCTGATTTATTAGCAGAAAAATGCAAACTGGCGACTGATGAAATTTATG
CGCAACTGACGGAATTGGAATTGGACGGCGTGGTGGCGGCTATGCCGGGCGGGCGTTTCCAGCGGATTAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(346-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0F0I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

62.687

100

0.635
  dprA Neisseria meningitidis MC58

62.687

100

0.635
  dprA Neisseria gonorrhoeae MS11

61.5

100

0.62
  dprA Neisseria gonorrhoeae strain FA1090

61.25

100

0.617
  dprA Glaesserella parasuis strain SC1401

38.046

97.985

0.373
  dprA Vibrio cholerae strain A1552

36.25

100

0.365
  dprA Vibrio campbellii strain DS40M4

37.018

97.985

0.363