Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZH40_RS03830 Genome accession   NZ_CP079921
Coordinates   856771..857295 (+) Length   174 a.a.
NCBI ID   WP_005601045.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain P1875     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 851771..862295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH40_RS03820 (KZH40_03865) - 853441..853653 (+) 213 WP_005597221.1 hypothetical protein -
  KZH40_RS03825 (KZH40_03870) uvrA 853792..856620 (-) 2829 WP_005601043.1 excinuclease ABC subunit UvrA Machinery gene
  KZH40_RS03830 (KZH40_03875) ssb 856771..857295 (+) 525 WP_005601045.1 single-stranded DNA-binding protein Machinery gene
  KZH40_RS03835 (KZH40_03880) - 857460..858278 (-) 819 WP_005601047.1 GIY-YIG nuclease family protein -
  KZH40_RS03840 - 858352..858438 (+) 87 Protein_750 alcohol dehydrogenase -
  KZH40_RS03845 (KZH40_03885) - 858602..860593 (-) 1992 WP_005601050.1 DUF3732 domain-containing protein -
  KZH40_RS03850 (KZH40_03890) - 860590..861018 (-) 429 WP_005618945.1 three component ABC system middle component -
  KZH40_RS03855 (KZH40_03895) - 861015..862103 (-) 1089 WP_005618943.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19243.04 Da        Isoelectric Point: 4.9839

>NTDB_id=515533 KZH40_RS03830 WP_005601045.1 856771..857295(+) (ssb) [Actinobacillus pleuropneumoniae strain P1875]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFAGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=515533 KZH40_RS03830 WP_005601045.1 856771..857295(+) (ssb) [Actinobacillus pleuropneumoniae strain P1875]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACGGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTATACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGTGATTTCGCCGGTAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTATAACCAAGGTAACAGCGGTTACGGCTACGATCAAACAGCAAGCCGCCCTGCTCAACAAGCAGCAAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

77.473

100

0.81
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48.571

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.571

100

0.489
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.571

100

0.368