Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JAV55_RS08940 Genome accession   NZ_CP065943
Coordinates   1762629..1763531 (+) Length   300 a.a.
NCBI ID   WP_003181744.1    Uniprot ID   A0A1Y0YS93
Organism   Bacillus licheniformis strain H2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1757629..1768531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS08920 (JAV55_08920) - 1758291..1759979 (+) 1689 WP_017474806.1 hypothetical protein -
  JAV55_RS08925 (JAV55_08925) - 1759976..1760257 (+) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  JAV55_RS08930 (JAV55_08930) sucC 1760434..1761594 (+) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  JAV55_RS08935 (JAV55_08935) sucD 1761613..1762515 (+) 903 WP_003181741.1 succinate--CoA ligase subunit alpha -
  JAV55_RS08940 (JAV55_08940) dprA 1762629..1763531 (+) 903 WP_003181744.1 DNA-processing protein DprA Machinery gene
  JAV55_RS08945 (JAV55_08945) topA 1763736..1765811 (+) 2076 WP_003181746.1 type I DNA topoisomerase -
  JAV55_RS08950 (JAV55_08950) trmFO 1765887..1767191 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JAV55_RS08955 (JAV55_08955) xerC 1767258..1768172 (+) 915 WP_003181750.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33196.51 Da        Isoelectric Point: 10.2533

>NTDB_id=515532 JAV55_RS08940 WP_003181744.1 1762629..1763531(+) (dprA) [Bacillus licheniformis strain H2]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=515532 JAV55_RS08940 WP_003181744.1 1762629..1763531(+) (dprA) [Bacillus licheniformis strain H2]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAAAATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YS93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

39.404

100

0.397