Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   JAN99_RS04680 Genome accession   NZ_CP065927
Coordinates   934326..935162 (-) Length   278 a.a.
NCBI ID   WP_136116150.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm9ST603     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 929326..940162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAN99_RS04660 (JAN99_04655) - 929628..930620 (-) 993 WP_136116144.1 D-lactate dehydrogenase -
  JAN99_RS04665 (JAN99_04660) - 930635..931201 (-) 567 Protein_865 PTS sugar transporter subunit IIC -
  JAN99_RS04670 (JAN99_04665) - 931214..932016 (+) 803 Protein_866 LysR family transcriptional regulator -
  JAN99_RS04675 (JAN99_04670) topA 932091..934220 (-) 2130 WP_136116148.1 type I DNA topoisomerase -
  JAN99_RS04680 (JAN99_04675) dprA 934326..935162 (-) 837 WP_136116150.1 DNA-processing protein DprA Machinery gene
  JAN99_RS04685 (JAN99_04680) - 935227..936018 (-) 792 WP_136116153.1 ribonuclease HII -
  JAN99_RS04690 (JAN99_04685) ylqF 936008..936856 (-) 849 WP_010922312.1 ribosome biogenesis GTPase YlqF -
  JAN99_RS04695 (JAN99_04690) - 937075..937515 (+) 441 WP_002989774.1 DUF1836 domain-containing protein -
  JAN99_RS04700 (JAN99_04695) - 937512..938162 (+) 651 WP_002984629.1 hemolysin III family protein -
  JAN99_RS04705 (JAN99_04700) - 938279..939190 (+) 912 WP_047235287.1 diacylglycerol kinase family protein -
  JAN99_RS04710 (JAN99_04705) - 939240..939674 (-) 435 WP_111693216.1 hypothetical protein -

Sequence


Protein


Download         Length: 278 a.a.        Molecular weight: 31055.03 Da        Isoelectric Point: 9.2565

>NTDB_id=515371 JAN99_RS04680 WP_136116150.1 934326..935162(-) (dprA) [Streptococcus pyogenes strain emm9ST603]
MNHFELYKLKKAGLTNKNILNILDYQKHQEKSLSLRDMAVVSGCKHPSHFIEAYKQLDIQNLKIEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLEKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPREEALSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGKSEGCLQLIKEGATCVTSGMDILSEY

Nucleotide


Download         Length: 837 bp        

>NTDB_id=515371 JAN99_RS04680 WP_136116150.1 934326..935162(-) (dprA) [Streptococcus pyogenes strain emm9ST603]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAAGCTGGACTGACTAATAAAAACATTCTCAATATTCTTGACTACCAAAA
ACACCAGGAAAAATCGTTGTCACTTCGAGATATGGCCGTTGTTTCTGGTTGTAAGCATCCGTCTCACTTTATAGAAGCCT
ATAAGCAGTTAGATATTCAAAATTTAAAAATAGAATTTAAACAATTTCCTAGTATTTCTATCTTAGATAAGCATTACCCA
ATGGCATTGAAAGAAATATACAATCCACCTGTCCTCTTGTTTTTTCAGGGAAATTTAGACCTTCTTGAGAAACCTAAATT
AGCCATTGTCGGCTCCAGACGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACCATC
GCTATTATTGGAACAGGGTTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAACTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAAGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GCCGAGGTATTCTTGTCGTTGAAGCAAAAAATCGTTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAAGGCCGA
GACATTTTTGCTGTCCCAGGAAACATTTTGGACGGGAAATCCGAAGGTTGCCTTCAGTTAATTAAAGAGGGAGCAACATG
CGTCACATCGGGCATGGATATCCTTTCAGAGTACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.266

100

0.673

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.072

100

0.601

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.072

100

0.601

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.072

100

0.601

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.072

100

0.601

  dprA/cilB/dalA Streptococcus mitis SK321

60.072

100

0.601

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

59.712

100

0.597

  dprA Lactococcus lactis subsp. cremoris KW2

56.835

100

0.568

  dprA Legionella pneumophila strain ERS1305867

42.857

85.612

0.367