Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JC285_RS12635 Genome accession   NZ_CP065924
Coordinates   2139437..2139736 (-) Length   99 a.a.
NCBI ID   WP_198462542.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11304-2A     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2134437..2144736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC285_RS10105 (JC285_10105) - 2134531..2136408 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  JC285_RS10110 (JC285_10110) - 2136520..2137335 (+) 816 WP_014614541.1 ZIP family metal transporter -
  JC285_RS10115 (JC285_10115) comA 2137592..2139244 (-) 1653 WP_198456075.1 peptide cleavage/export ABC transporter Regulator
  JC285_RS12630 (JC285_10120) - 2139162..2139437 (-) 276 WP_198462700.1 cysteine peptidase family C39 domain-containing protein -
  JC285_RS12635 (JC285_10125) comA 2139437..2139736 (-) 300 WP_198462542.1 cysteine peptidase family C39 domain-containing protein Regulator
  JC285_RS10130 (JC285_10130) - 2140111..2140419 (-) 309 WP_063284913.1 DUF3884 family protein -
  JC285_RS10135 (JC285_10135) - 2140494..2141624 (-) 1131 WP_063284912.1 glycosyltransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11315.26 Da        Isoelectric Point: 8.8613

>NTDB_id=515274 JC285_RS12635 WP_198462542.1 2139437..2139736(-) (comA) [Staphylococcus pseudintermedius strain SP_11304-2A]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDL
QYPFIVHVKKITIIFTIML

Nucleotide


Download         Length: 300 bp        

>NTDB_id=515274 JC285_RS12635 WP_198462542.1 2139437..2139736(-) (comA) [Staphylococcus pseudintermedius strain SP_11304-2A]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGACTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATTTA
CAGTATCCTTTTATCGTTCATGTTAAAAAAATAACAATCATTTTCACTATTATGTTGTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

60

90.909

0.545
  comA Streptococcus mitis SK321

58.889

90.909

0.535
  comA Streptococcus mitis NCTC 12261

58.889

90.909

0.535
  comA Streptococcus pneumoniae TIGR4

57.778

90.909

0.525
  comA Streptococcus pneumoniae D39

57.778

90.909

0.525
  comA Streptococcus pneumoniae Rx1

57.778

90.909

0.525
  comA Streptococcus pneumoniae R6

57.778

90.909

0.525
  comA/nlmT Streptococcus mutans UA159

53.333

90.909

0.485