Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JC285_RS10115 Genome accession   NZ_CP065924
Coordinates   2137592..2139244 (-) Length   550 a.a.
NCBI ID   WP_198456075.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11304-2A     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2132592..2144244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC285_RS10100 (JC285_10100) recQ 2132740..2134521 (-) 1782 WP_198462541.1 DNA helicase RecQ -
  JC285_RS10105 (JC285_10105) - 2134531..2136408 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  JC285_RS10110 (JC285_10110) - 2136520..2137335 (+) 816 WP_014614541.1 ZIP family metal transporter -
  JC285_RS10115 (JC285_10115) comA 2137592..2139244 (-) 1653 WP_198456075.1 peptide cleavage/export ABC transporter Regulator
  JC285_RS12630 (JC285_10120) - 2139162..2139437 (-) 276 WP_198462700.1 cysteine peptidase family C39 domain-containing protein -
  JC285_RS12635 (JC285_10125) comA 2139437..2139736 (-) 300 WP_198462542.1 cysteine peptidase family C39 domain-containing protein Regulator
  JC285_RS10130 (JC285_10130) - 2140111..2140419 (-) 309 WP_063284913.1 DUF3884 family protein -
  JC285_RS10135 (JC285_10135) - 2140494..2141624 (-) 1131 WP_063284912.1 glycosyltransferase -

Sequence

Protein


Download         Length: 550 a.a.        Molecular weight: 62226.80 Da        Isoelectric Point: 9.7327

>NTDB_id=515268 JC285_RS10115 WP_198456075.1 2137592..2139244(-) (comA) [Staphylococcus pseudintermedius strain SP_11304-2A]
MIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINILSPYI
KHLFRLPITFFETGRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFM
NSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYCEKTFLLNKLNIKQNVLKKVVQLILNVSI
LWVGANLVIDNQISIGTLLVFNSLMIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIF
SNISYGYVYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKLMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQ
TYIFNGTILENLLLGVVKEVTQKDIDSAIKMVELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMD
EATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 1653 bp        

>NTDB_id=515268 JC285_RS10115 WP_198456075.1 2137592..2139244(-) (comA) [Staphylococcus pseudintermedius strain SP_11304-2A]
TTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATATTTTATGAAGTCAATTAT
TGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTGCTTCTTACATTATGCAAC
AAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAATATACTTTCACCATACATT
AAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCAGGAGACATACTATCAAGACTTAATGATGCAAA
TTCAATTACTGATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAGTTGGCATATCTATCTTCC
TGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTAATTGTTTTTGGTTTTATG
AACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTTGATGGAAAATATAACAGG
TATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATTTTTCGAATTATTGCGAAA
AAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTAATATTAAATGTATCGATT
TTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTTTAATTCATTAATGATTTA
CTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGGCTAATAATCGATTGAATG
AAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAACTCAAGTAAACTTATATTT
TCAAATATTTCATATGGATATGTGTACGAAAAAGAAATCCTTACAGATATTAATATAACAATAGAACATAATAGTAAAGT
AGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAATTGATGGTTAGTTTTTTTGAACCTTCAAAGGGTA
AAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATTATATACATTCCACAACAA
ACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTACGCAAAAGGACATAGATAG
TGCTATTAAAATGGTTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTGTATTAAGTTCTGATTTTT
CTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCTTCTATATTGATAATGGAT
GAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTTAAATAAAACTATTATATT
TATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAAAAATTATAGAAGAGGGCT
CACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-271)

ABC transporter (ABC_tran)

(334-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

52.364

100

0.524
  comA Streptococcus mitis NCTC 12261

52.182

100

0.522
  comA Streptococcus pneumoniae D39

51.818

100

0.518
  comA Streptococcus pneumoniae R6

51.818

100

0.518
  comA Streptococcus pneumoniae Rx1

51.818

100

0.518
  comA Streptococcus gordonii str. Challis substr. CH1

51.636

100

0.516
  comA Streptococcus pneumoniae TIGR4

51.455

100

0.515
  comA/nlmT Streptococcus mutans UA159

49.273

100

0.493