Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I8N72_RS01755 Genome accession   NZ_CP065790
Coordinates   325563..326000 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM1082     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320563..331000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N72_RS19485 - 321143..321268 (-) 126 Protein_299 hypothetical protein -
  I8N72_RS01720 (I8N72_01720) - 321421..322623 (+) 1203 WP_015388720.1 GTP-binding protein -
  I8N72_RS01725 (I8N72_01725) - 322688..323824 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  I8N72_RS01730 (I8N72_01730) - 323839..324273 (+) 435 WP_003156592.1 RDD family protein -
  I8N72_RS01735 (I8N72_01735) - 324390..324665 (+) 276 WP_369719109.1 YckD family protein -
  I8N72_RS01740 (I8N72_01740) - 324769..324885 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  I8N72_RS01745 (I8N72_01745) - 324884..325102 (+) 219 Protein_305 family 1 glycosylhydrolase -
  I8N72_RS01750 (I8N72_01750) nin/comJ 325143..325541 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  I8N72_RS01755 (I8N72_01755) nucA/comI 325563..326000 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I8N72_RS01760 (I8N72_01760) hxlB 326359..326916 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  I8N72_RS01765 (I8N72_01765) hxlA 326913..327548 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  I8N72_RS01770 (I8N72_01770) - 327780..328142 (+) 363 WP_003156585.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=514443 I8N72_RS01755 WP_003156588.1 325563..326000(-) (nucA/comI) [Bacillus velezensis strain LBUM1082]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=514443 I8N72_RS01755 WP_003156588.1 325563..326000(-) (nucA/comI) [Bacillus velezensis strain LBUM1082]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641