Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   I6G90_RS19520 Genome accession   NZ_CP065745
Coordinates   4246049..4246375 (-) Length   108 a.a.
NCBI ID   WP_197928821.1    Uniprot ID   A0A7T2PF13
Organism   Aeromonas allosaccharophila strain FDAARGOS_933     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4241049..4251375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G90_RS19500 (I6G90_19495) - 4241386..4242084 (-) 699 WP_197928815.1 DnaT-like ssDNA-binding domain-containing protein -
  I6G90_RS19505 (I6G90_19500) - 4242383..4243354 (+) 972 WP_197928817.1 response regulator -
  I6G90_RS19510 (I6G90_19505) - 4243430..4244827 (-) 1398 WP_058053047.1 peptide MFS transporter -
  I6G90_RS19515 (I6G90_19510) galU 4245041..4245952 (-) 912 WP_197928819.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I6G90_RS19520 (I6G90_19515) comEA/comE1 4246049..4246375 (-) 327 WP_197928821.1 ComEA family DNA-binding protein Machinery gene
  I6G90_RS19525 (I6G90_19520) pta 4246754..4248934 (-) 2181 WP_042059882.1 phosphate acetyltransferase -
  I6G90_RS19530 (I6G90_19525) - 4248991..4250193 (-) 1203 WP_042059883.1 acetate kinase -
  I6G90_RS19535 (I6G90_19530) yfbV 4250498..4250938 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11398.40 Da        Isoelectric Point: 9.6564

>NTDB_id=513880 I6G90_RS19520 WP_197928821.1 4246049..4246375(-) (comEA/comE1) [Aeromonas allosaccharophila strain FDAARGOS_933]
MLMKKLSAIMLLACLPLFSQPVLAADKVAPKQTTTAAAAAAKEDGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGK
FTSVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=513880 I6G90_RS19520 WP_197928821.1 4246049..4246375(-) (comEA/comE1) [Aeromonas allosaccharophila strain FDAARGOS_933]
ATGCTGATGAAGAAACTCTCTGCAATCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGTAGCGCCCAAGCAAACAACCACGGCCGCTGCCGCTGCCGCCAAGGAGGACGGCAAACTGAATATCAATACCGCCACCC
TTGCCGAACTCACCAGCCTCAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAG
TTCACCTCGGTCGATCAGCTGGCGGATGTCAACGGCATTGGCCCGGCCACGCTGGAAGCCAATCGTGACATGATCATCGT
CAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T2PF13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.673

100

0.509
  comEA Vibrio cholerae C6706

48.148

100

0.481
  comEA Vibrio cholerae strain A1552

48.148

100

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

43.434

91.667

0.398
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

57.407

0.38
  comEA Legionella pneumophila str. Paris

39.604

93.519

0.37
  comEA Legionella pneumophila strain ERS1305867

39.604

93.519

0.37