Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   KWY98_RS03940 Genome accession   NZ_CP078119
Coordinates   756259..757446 (-) Length   395 a.a.
NCBI ID   WP_003690121.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1291     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 751259..762446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY98_RS03920 (KWY98_03920) - 751587..752393 (-) 807 Protein_745 opacity family porin -
  KWY98_RS03925 (KWY98_03925) - 752511..753055 (-) 545 Protein_746 IS1595 family transposase -
  KWY98_RS11985 - 753045..753173 (-) 129 Protein_747 phosphomethylpyrimidine synthase ThiC -
  KWY98_RS03930 (KWY98_03930) topA 753394..755700 (-) 2307 WP_003690118.1 type I DNA topoisomerase -
  KWY98_RS03935 (KWY98_03935) - 755772..756233 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  KWY98_RS03940 (KWY98_03940) dprA 756259..757446 (-) 1188 WP_003690121.1 DNA-processing protein DprA Machinery gene
  KWY98_RS03945 (KWY98_03945) - 757537..758815 (-) 1279 Protein_751 sigma-54-dependent transcriptional regulator -
  KWY98_RS03950 (KWY98_03950) - 758808..760928 (-) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  KWY98_RS03955 (KWY98_03955) - 760928..761527 (-) 600 WP_003690128.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41866.95 Da        Isoelectric Point: 6.3096

>NTDB_id=513876 KWY98_RS03940 WP_003690121.1 756259..757446(-) (dprA) [Neisseria gonorrhoeae strain 1291]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPVHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=513876 KWY98_RS03940 WP_003690121.1 756259..757446(-) (dprA) [Neisseria gonorrhoeae strain 1291]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCTGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCGGTTCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

99.747

100

0.997

  dprA Neisseria gonorrhoeae MS11

99.494

100

0.995

  dprA Neisseria meningitidis strain C311

90.428

100

0.909

  dprA Neisseria meningitidis MC58

90.428

100

0.909

  dprA Vibrio cholerae O1 biovar El Tor strain E7946

37.28

100

0.375

  dprA Vibrio cholerae strain A1552

37.28

100

0.375