Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   I6G86_RS10710 Genome accession   NZ_CP065637
Coordinates   1900790..1901854 (-) Length   354 a.a.
NCBI ID   WP_332871910.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_929     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1895790..1906854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G86_RS09750 (I6G86_09755) atpA 1896044..1897552 (-) 1509 WP_004259170.1 F0F1 ATP synthase subunit alpha -
  I6G86_RS09755 (I6G86_09760) - 1897618..1898145 (-) 528 WP_014024339.1 F0F1 ATP synthase subunit delta -
  I6G86_RS09760 (I6G86_09765) atpF 1898160..1898666 (-) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  I6G86_RS09765 (I6G86_09770) atpB 1898680..1899393 (-) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  I6G86_RS09770 (I6G86_09775) - 1899448..1899663 (-) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  I6G86_RS09775 (I6G86_09780) - 1899859..1900635 (-) 777 WP_042217333.1 alpha/beta hydrolase family protein -
  I6G86_RS10710 comEC 1900790..1901854 (-) 1065 WP_332871910.1 ComEC/Rec2 family competence protein Machinery gene
  I6G86_RS10715 comEC 1901773..1902534 (-) 762 WP_408611417.1 ComEC/Rec2 family competence protein Machinery gene
  I6G86_RS09785 (I6G86_09790) - 1902953..1903603 (-) 651 WP_042217284.1 helix-hairpin-helix domain-containing protein -
  I6G86_RS09790 (I6G86_09795) - 1903661..1904836 (-) 1176 WP_004259189.1 SLC13 family permease -
  I6G86_RS09795 (I6G86_09800) - 1905001..1906557 (-) 1557 WP_004259192.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 40246.60 Da        Isoelectric Point: 9.2487

>NTDB_id=512416 I6G86_RS10710 WP_332871910.1 1900790..1901854(-) (comEC) [Lactococcus garvieae strain FDAARGOS_929]
MPGLLFIFLLSLFGTALTLFNPFFIVLESIVRWVGDLFDQPIVFGKPNLIFLLLLFMLSGLALDFYKKRNWNLSIIIVLF
LLFFFVKNPKHPSITMVDVGQGDSILLQDSWNSQNILIDTGGRLKIRADEQWKEGIYKSNAENTLLPYLRARGVSKIDVL
IVTHPDEDHIGDLESVAQKVPIKNVYVSASALEKKSFAKKLSRLNSQIHIVQEGDKLPIFNSYLWFLTTGVEGKSDNDNS
LVTFGEFYGKKFLFTGDLEEEGEVRLQEEYPHLEVDVLKVGHHGSKTSSKEAFLEAINPKLALISAGKNNRYKHPNQETL
QQFAARGIKIYRTDQQGAIRLLYKKGSWHIQTVK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=512416 I6G86_RS10710 WP_332871910.1 1900790..1901854(-) (comEC) [Lactococcus garvieae strain FDAARGOS_929]
CTGCCAGGTTTACTTTTTATCTTTCTTCTTTCTTTATTTGGTACTGCTCTCACATTATTTAATCCTTTTTTTATTGTTTT
AGAATCAATAGTAAGATGGGTGGGCGATTTATTTGACCAGCCGATTGTCTTTGGCAAACCCAACCTTATTTTTTTACTTT
TACTTTTTATGCTGAGTGGACTTGCCCTTGATTTTTATAAAAAAAGAAACTGGAACTTGAGCATAATAATTGTTCTTTTC
TTGCTTTTTTTCTTTGTTAAGAATCCTAAACACCCAAGCATTACAATGGTAGATGTGGGACAAGGGGACAGTATTCTTTT
ACAAGACAGTTGGAACAGCCAAAACATCCTCATCGATACGGGCGGGAGATTAAAAATAAGAGCTGATGAGCAGTGGAAGG
AGGGAATCTATAAGAGCAATGCCGAAAATACACTTCTGCCTTATCTGAGAGCGCGTGGCGTGAGTAAGATAGATGTTCTG
ATTGTGACACATCCAGATGAGGATCATATTGGAGACCTGGAGAGTGTAGCTCAGAAAGTACCAATAAAAAATGTTTATGT
GTCAGCTTCTGCATTGGAGAAGAAAAGCTTTGCTAAAAAACTCAGCCGTTTAAACAGTCAGATTCACATTGTGCAGGAGG
GGGACAAGCTCCCGATCTTTAACAGTTATCTCTGGTTTTTAACGACAGGCGTTGAAGGGAAAAGCGACAATGATAATTCT
TTAGTGACATTTGGTGAATTTTATGGGAAGAAATTTCTTTTTACAGGCGACTTAGAAGAAGAGGGAGAGGTGCGGCTCCA
GGAAGAATATCCCCATTTAGAGGTGGATGTCCTAAAAGTTGGACATCATGGCAGTAAAACTTCTTCAAAGGAAGCTTTTT
TAGAAGCAATCAACCCTAAGCTCGCTCTTATTTCGGCTGGAAAGAATAATCGATATAAACATCCCAATCAAGAAACGCTC
CAACAATTCGCTGCACGAGGTATAAAAATTTATCGTACAGACCAGCAAGGGGCAATCCGTCTCCTTTATAAAAAAGGCAG
TTGGCACATTCAAACAGTAAAGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(99-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

50.435

97.458

0.492
  comEC/celB Streptococcus mitis SK321

45.125

100

0.458
  comEC/celB Streptococcus mitis NCTC 12261

43.855

100

0.444
  comEC/celB Streptococcus pneumoniae TIGR4

42.577

100

0.429
  comEC/celB Streptococcus pneumoniae D39

42.017

100

0.424
  comEC/celB Streptococcus pneumoniae Rx1

42.017

100

0.424
  comEC/celB Streptococcus pneumoniae R6

42.017

100

0.424
  comEC Bacillus subtilis subsp. subtilis str. 168

35.068

100

0.362