Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   I6G86_RS10715 Genome accession   NZ_CP065637
Coordinates   1901773..1902534 (-) Length   253 a.a.
NCBI ID   WP_408611417.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_929     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896773..1907534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G86_RS09755 (I6G86_09760) - 1897618..1898145 (-) 528 WP_014024339.1 F0F1 ATP synthase subunit delta -
  I6G86_RS09760 (I6G86_09765) atpF 1898160..1898666 (-) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  I6G86_RS09765 (I6G86_09770) atpB 1898680..1899393 (-) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  I6G86_RS09770 (I6G86_09775) - 1899448..1899663 (-) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  I6G86_RS09775 (I6G86_09780) - 1899859..1900635 (-) 777 WP_042217333.1 alpha/beta hydrolase family protein -
  I6G86_RS10710 comEC 1900790..1901854 (-) 1065 WP_332871910.1 ComEC/Rec2 family competence protein Machinery gene
  I6G86_RS10715 comEC 1901773..1902534 (-) 762 WP_408611417.1 ComEC/Rec2 family competence protein Machinery gene
  I6G86_RS09785 (I6G86_09790) - 1902953..1903603 (-) 651 WP_042217284.1 helix-hairpin-helix domain-containing protein -
  I6G86_RS09790 (I6G86_09795) - 1903661..1904836 (-) 1176 WP_004259189.1 SLC13 family permease -
  I6G86_RS09795 (I6G86_09800) - 1905001..1906557 (-) 1557 WP_004259192.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29699.45 Da        Isoelectric Point: 9.8697

>NTDB_id=512417 I6G86_RS10715 WP_408611417.1 1901773..1902534(-) (comEC) [Lactococcus garvieae strain FDAARGOS_929]
MEIPEEQRNFSGFDYRKYLRTQGVYRLLKIEKIHGFEEKQDFDLRLVRRKAILWAQKHFPSPMSSYMTGLLFGWLDKDFE
EMGELYTSLGIIHLFALSGMQVNFFIELLRNILLRLGLSQKLVFFIQIPFSIFYAFLTGLSLSILRALLQKNIPLKNSSD
RFSVTFLLLMVFSPYFLLTTGGQLTMLYSFLITFFSGKFKELKGLKKSLLDSTVLAVGVLPLLIFYFCQVYFLSFFFLYL
VLLSHYLILFLLF

Nucleotide


Download         Length: 762 bp        

>NTDB_id=512417 I6G86_RS10715 WP_408611417.1 1901773..1902534(-) (comEC) [Lactococcus garvieae strain FDAARGOS_929]
TTGGAGATTCCAGAAGAGCAAAGAAATTTTTCAGGTTTTGATTACAGGAAGTATTTAAGGACTCAAGGGGTCTATCGTCT
TCTTAAAATAGAAAAAATTCATGGATTTGAAGAAAAACAGGACTTTGATTTACGGCTGGTACGCCGAAAAGCCATTCTTT
GGGCTCAGAAACATTTCCCTTCTCCTATGTCGTCCTATATGACAGGGCTTCTTTTTGGGTGGTTGGATAAAGACTTTGAA
GAAATGGGGGAGCTTTACACCAGTCTTGGCATTATCCATTTATTTGCGCTGTCAGGTATGCAGGTGAATTTTTTTATTGA
ACTTCTCCGAAATATTTTACTGCGGCTTGGCTTATCACAGAAGTTAGTCTTTTTTATCCAAATTCCCTTTTCGATATTTT
ATGCATTTCTTACAGGCTTATCTCTTTCAATCTTACGCGCGCTTCTTCAAAAAAATATCCCCCTTAAAAATTCAAGCGAT
AGATTTTCTGTCACTTTTCTTCTTTTAATGGTGTTCAGTCCTTATTTCCTGCTGACAACAGGCGGACAACTCACGATGCT
TTATTCTTTCTTAATCACATTTTTTTCAGGAAAGTTCAAAGAACTAAAAGGATTAAAAAAATCGTTACTTGATTCTACCG
TCCTAGCTGTTGGGGTTCTTCCGCTTTTGATTTTTTACTTCTGCCAGGTTTACTTTTTATCTTTCTTCTTTCTTTATTTG
GTACTGCTCTCACATTATTTAATCCTTTTTTTATTGTTTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(70-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

62.115

89.723

0.557
  comEC/celB Streptococcus pneumoniae Rx1

47.692

100

0.49
  comEC/celB Streptococcus pneumoniae D39

47.692

100

0.49
  comEC/celB Streptococcus pneumoniae R6

47.692

100

0.49
  comEC/celB Streptococcus mitis SK321

50.431

91.7

0.462
  comEC/celB Streptococcus pneumoniae TIGR4

50

91.7

0.458
  comEC/celB Streptococcus mitis NCTC 12261

49.138

91.7

0.451