Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   I6H05_RS02880 Genome accession   NZ_CP065604
Coordinates   610955..611284 (+) Length   109 a.a.
NCBI ID   WP_005548420.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 605955..616284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS02860 (I6H05_02860) thrC 606377..607651 (+) 1275 WP_005568426.1 threonine synthase -
  I6H05_RS02865 (I6H05_02865) - 607710..608429 (+) 720 WP_025298444.1 4'-phosphopantetheinyl transferase family protein -
  I6H05_RS02870 (I6H05_02870) hflK 608525..609778 (+) 1254 WP_005589874.1 FtsH protease activity modulator HflK -
  I6H05_RS02875 (I6H05_02875) hflC 609778..610665 (+) 888 WP_005568420.1 protease modulator HflC -
  I6H05_RS02880 (I6H05_02880) comE1/comEA 610955..611284 (+) 330 WP_005548420.1 ComEA family DNA-binding protein Machinery gene
  I6H05_RS02885 (I6H05_02885) - 611397..611990 (+) 594 WP_005568418.1 XTP/dITP diphosphatase -
  I6H05_RS02890 (I6H05_02890) - 612029..612352 (+) 324 WP_005568416.1 YbjQ family protein -
  I6H05_RS02895 (I6H05_02895) hemW 612352..613521 (+) 1170 WP_025298445.1 radical SAM family heme chaperone HemW -
  I6H05_RS02900 (I6H05_02900) rpiA 613620..614276 (+) 657 WP_005539288.1 ribose-5-phosphate isomerase RpiA -
  I6H05_RS02905 (I6H05_02905) serA 614295..615527 (+) 1233 WP_005568413.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11341.10 Da        Isoelectric Point: 9.6912

>NTDB_id=512174 I6H05_RS02880 WP_005548420.1 610955..611284(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=512174 I6H05_RS02880 WP_005548420.1 610955..611284(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTGGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60.909

100

0.615
  comEA/comE1 Glaesserella parasuis strain SC1401

53.509

100

0.56
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Acinetobacter baylyi ADP1

39.655

100

0.422
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385