Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STT128_RS06875 Genome accession   NZ_CP065500
Coordinates   1324233..1326203 (-) Length   656 a.a.
NCBI ID   WP_347230046.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST128     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1319233..1331203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT128_RS06855 (STT128_06935) amiF 1319736..1320665 (-) 930 WP_347230045.1 ATP-binding cassette domain-containing protein Regulator
  STT128_RS06860 (STT128_06940) amiE 1320658..1321743 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STT128_RS06865 (STT128_06945) amiD 1321753..1322679 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  STT128_RS06870 (STT128_06950) amiC 1322679..1324172 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  STT128_RS06875 (STT128_06955) amiA3 1324233..1326203 (-) 1971 WP_347230046.1 peptide ABC transporter substrate-binding protein Regulator
  STT128_RS06880 (STT128_06960) - 1326439..1326629 (-) 191 Protein_1301 IS3 family transposase -
  STT128_RS06885 - 1326620..1327023 (-) 404 Protein_1302 ABC transporter ATP-binding protein -
  STT128_RS06890 (STT128_06975) - 1327018..1327378 (-) 361 Protein_1303 TatD family hydrolase -
  STT128_RS06895 (STT128_06980) - 1327726..1328931 (+) 1206 WP_084831159.1 OFA family MFS transporter -
  STT128_RS06900 (STT128_06985) - 1328978..1330330 (-) 1353 Protein_1305 IS3 family transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72220.26 Da        Isoelectric Point: 5.0982

>NTDB_id=511208 STT128_RS06875 WP_347230046.1 1324233..1326203(-) (amiA3) [Streptococcus thermophilus strain ST128]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTEPGASTLAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFVKAKDALQADGVQFPVHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATVNAANAAAEDWDISNSVAWAPDYQDPSTYLDIFKTTSSENTKAFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASIQVGDKNSSDYFKYMKPQEKVVTKKEYKQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=511208 STT128_RS06875 WP_347230046.1 1324233..1326203(-) (amiA3) [Streptococcus thermophilus strain ST128]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATTGGCTATTGGTGTAAACATTGACCGTCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTTCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGTCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAGTTCATTTGGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTAGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACAGTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGCTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TCAAATATATGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATAAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

96.499

100

0.966
  amiA3 Streptococcus thermophilus LMD-9

96.499

100

0.966
  amiA Streptococcus salivarius strain HSISS4

91.311

100

0.913