Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STT128_RS06855 Genome accession   NZ_CP065500
Coordinates   1319736..1320665 (-) Length   309 a.a.
NCBI ID   WP_347230045.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST128     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314736..1325665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT128_RS06830 (STT128_06910) - 1316022..1316837 (-) 816 WP_024010001.1 Cof-type HAD-IIB family hydrolase -
  STT128_RS06835 (STT128_06915) - 1316830..1317624 (-) 795 WP_011681412.1 HAD family hydrolase -
  STT128_RS06840 (STT128_06920) - 1317809..1318186 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STT128_RS06845 (STT128_06925) - 1318191..1318889 (+) 699 WP_347230044.1 ABC transporter ATP-binding protein -
  STT128_RS06850 (STT128_06930) - 1318901..1319686 (+) 786 WP_011681414.1 hypothetical protein -
  STT128_RS06855 (STT128_06935) amiF 1319736..1320665 (-) 930 WP_347230045.1 ATP-binding cassette domain-containing protein Regulator
  STT128_RS06860 (STT128_06940) amiE 1320658..1321743 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STT128_RS06865 (STT128_06945) amiD 1321753..1322679 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  STT128_RS06870 (STT128_06950) amiC 1322679..1324172 (-) 1494 WP_064355564.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35175.33 Da        Isoelectric Point: 6.5989

>NTDB_id=511204 STT128_RS06855 WP_347230045.1 1319736..1320665(-) (amiF) [Streptococcus thermophilus strain ST128]
MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIMEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=511204 STT128_RS06855 WP_347230045.1 1319736..1320665(-) (amiF) [Streptococcus thermophilus strain ST128]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAAAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCACACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCATGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.353

100

0.994
  amiF Streptococcus thermophilus LMD-9

99.029

100

0.99
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977