Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STT128_RS06870 Genome accession   NZ_CP065500
Coordinates   1322679..1324172 (-) Length   497 a.a.
NCBI ID   WP_064355564.1    Uniprot ID   A0A2X3UVI7
Organism   Streptococcus thermophilus strain ST128     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1317679..1329172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT128_RS06840 (STT128_06920) - 1317809..1318186 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STT128_RS06845 (STT128_06925) - 1318191..1318889 (+) 699 WP_347230044.1 ABC transporter ATP-binding protein -
  STT128_RS06850 (STT128_06930) - 1318901..1319686 (+) 786 WP_011681414.1 hypothetical protein -
  STT128_RS06855 (STT128_06935) amiF 1319736..1320665 (-) 930 WP_347230045.1 ATP-binding cassette domain-containing protein Regulator
  STT128_RS06860 (STT128_06940) amiE 1320658..1321743 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STT128_RS06865 (STT128_06945) amiD 1321753..1322679 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  STT128_RS06870 (STT128_06950) amiC 1322679..1324172 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  STT128_RS06875 (STT128_06955) amiA3 1324233..1326203 (-) 1971 WP_347230046.1 peptide ABC transporter substrate-binding protein Regulator
  STT128_RS06880 (STT128_06960) - 1326439..1326629 (-) 191 Protein_1301 IS3 family transposase -
  STT128_RS06885 - 1326620..1327023 (-) 404 Protein_1302 ABC transporter ATP-binding protein -
  STT128_RS06890 (STT128_06975) - 1327018..1327378 (-) 361 Protein_1303 TatD family hydrolase -
  STT128_RS06895 (STT128_06980) - 1327726..1328931 (+) 1206 WP_084831159.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55866.73 Da        Isoelectric Point: 10.0536

>NTDB_id=511207 STT128_RS06870 WP_064355564.1 1322679..1324172(-) (amiC) [Streptococcus thermophilus strain ST128]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=511207 STT128_RS06870 WP_064355564.1 1322679..1324172(-) (amiC) [Streptococcus thermophilus strain ST128]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTATTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCTAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3UVI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96