Detailed information NTG0510864

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STCNRZ887_RS08435
• Genome accession: NZ_CP065491
• Coordinates: 1638682..1639110 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CNRZ887
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1633682..1644110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STCNRZ887_RS08395 (STCNRZ887_08395)	-	1633815..1634263 (-)	449	Protein_1595	CAAX protease	-
STCNRZ887_RS08400	-	1634337..1634762 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
STCNRZ887_RS08405 (STCNRZ887_08405)	-	1635005..1635202 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STCNRZ887_RS08410 (STCNRZ887_08410)	-	1635451..1636644 (-)	1194	WP_022096898.1	acetate kinase	-
STCNRZ887_RS08415 (STCNRZ887_08415)	comYH	1636700..1637656 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
STCNRZ887_RS08420 (STCNRZ887_08420)	comGG	1637701..1638018 (-)	318	WP_011226623.1	competence type IV pilus minor pilin ComGG	-
STCNRZ887_RS08425 (STCNRZ887_08425)	comYF	1637996..1638433 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
STCNRZ887_RS08430 (STCNRZ887_08430)	comGE	1638417..1638710 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STCNRZ887_RS08435 (STCNRZ887_08435)	comYD	1638682..1639110 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STCNRZ887_RS08440 (STCNRZ887_08440)	comYC	1639070..1639396 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STCNRZ887_RS08445 (STCNRZ887_08445)	comYB	1639393..1640493 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
STCNRZ887_RS08450 (STCNRZ887_08450)	comGA/cglA/cilD	1640375..1641316 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
STCNRZ887_RS08455 (STCNRZ887_08455)	-	1641397..1641759 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=510864 STCNRZ887_RS08435 WP_011226626.1 1638682..1639110(-) (comYD) [Streptococcus thermophilus strain CNRZ887]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=510864 STCNRZ887_RS08435 WP_011226626.1 1638682..1639110(-) (comYD) [Streptococcus thermophilus strain CNRZ887]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38