Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   STCNRZ1575_RS07465 Genome accession   NZ_CP065490
Coordinates   1429523..1430218 (-) Length   231 a.a.
NCBI ID   WP_022096989.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1424523..1435218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS07450 (STCNRZ1575_07430) - 1425334..1425879 (-) 546 WP_011681493.1 GNAT family N-acetyltransferase -
  STCNRZ1575_RS07455 (STCNRZ1575_07435) - 1425945..1427207 (-) 1263 WP_180483361.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STCNRZ1575_RS07460 (STCNRZ1575_07440) - 1427293..1429533 (-) 2241 WP_260214154.1 DNA internalization-related competence protein ComEC/Rec2 -
  STCNRZ1575_RS07465 (STCNRZ1575_07445) comEA 1429523..1430218 (-) 696 WP_022096989.1 helix-hairpin-helix domain-containing protein Machinery gene
  STCNRZ1575_RS07470 (STCNRZ1575_07450) - 1430326..1431081 (-) 756 WP_014621872.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  STCNRZ1575_RS07475 (STCNRZ1575_07455) - 1431271..1432146 (+) 876 WP_311316617.1 polysaccharide deacetylase family protein -
  STCNRZ1575_RS07480 (STCNRZ1575_07460) - 1432196..1432960 (+) 765 WP_011681498.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  STCNRZ1575_RS07485 (STCNRZ1575_07465) - 1432964..1433233 (+) 270 WP_011226404.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24572.50 Da        Isoelectric Point: 4.5661

>NTDB_id=510795 STCNRZ1575_RS07465 WP_022096989.1 1429523..1430218(-) (comEA) [Streptococcus thermophilus strain CNRZ1575]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKVK
SKVTVDVKGAVVNPGVYTLKEGARVTDVIQEAGGMTEDADAKSVNLAASLSDEEVIYVANKDENVSVLDQTGTGQVSDKG
GQAVSKDGKINLNTATSEQLQTISGIGAKRTEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=510795 STCNRZ1575_RS07465 WP_022096989.1 1429523..1430218(-) (comEA) [Streptococcus thermophilus strain CNRZ1575]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTTTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CGTCTTCATCCAAACAAAGTTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACCGAAGGAAGTGAAAAAGTTAAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGTCAATCCAGGTGTCTATACGCTAAAGGAAGGCGCTAGGGTGACAGA
TGTCATTCAGGAAGCTGGAGGAATGACAGAAGATGCAGACGCTAAGAGTGTTAACTTAGCCGCAAGCTTGTCAGATGAAG
AGGTTATTTATGTAGCCAATAAAGATGAAAATGTTTCTGTCCTTGATCAAACAGGTACTGGTCAGGTCTCTGACAAAGGA
GGGCAAGCTGTATCTAAGGATGGCAAAATTAACTTAAATACAGCGACCTCAGAGCAGTTGCAAACCATTTCTGGAATTGG
AGCTAAGCGGACAGAGGATATCATTGCCTATCGTGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(167-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

98.701

100

0.987
  comEA/celA/cilE Streptococcus mitis SK321

40.611

99.134

0.403
  comEA/celA/cilE Streptococcus pneumoniae D39

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus mitis NCTC 12261

37.719

98.701

0.372