Detailed information NTG0510688

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: STAVA1121_RS08900
• Genome accession: NZ_CP065488
• Coordinates: 1691222..1691659 (-)
• Length: 145 a.a.
• NCBI ID: WP_082309153.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain AVA1121
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1686222..1696659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA1121_RS08865 (STAVA1121_08745)	-	1686288..1686950 (-)	663	WP_347131252.1	type II CAAX endopeptidase family protein	-
STAVA1121_RS08870 (STAVA1121_08750)	-	1687047..1687490 (-)	444	WP_347131253.1	CAAX protease	-
STAVA1121_RS08875	-	1687564..1687902 (-)	339	WP_347131255.1	CPBP family intramembrane glutamic endopeptidase	-
STAVA1121_RS08880 (STAVA1121_08760)	-	1688232..1688429 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
STAVA1121_RS08885 (STAVA1121_08765)	-	1688677..1689870 (-)	1194	WP_347131256.1	acetate kinase	-
STAVA1121_RS08890 (STAVA1121_08770)	comYH	1689926..1690882 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
STAVA1121_RS08895 (STAVA1121_08775)	comGG	1690927..1691244 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STAVA1121_RS08900 (STAVA1121_08780)	comYF	1691222..1691659 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
STAVA1121_RS08905 (STAVA1121_08785)	comGE	1691643..1691936 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STAVA1121_RS08910 (STAVA1121_08790)	comYD	1691908..1692336 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STAVA1121_RS08915 (STAVA1121_08795)	comYC	1692296..1692622 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STAVA1121_RS08920 (STAVA1121_08800)	comGB	1692619..1693718 (-)	1100	Protein_1699	competence type IV pilus assembly protein ComGB	-
STAVA1121_RS08925 (STAVA1121_08805)	comGA/cglA/cilD	1693600..1694541 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
STAVA1121_RS08930 (STAVA1121_08810)	-	1694622..1694984 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16423.93 Da
• Isoelectric Point: 8.9531

>NTDB_id=510688 STAVA1121_RS08900 WP_082309153.1 1691222..1691659(-) (comYF) [Streptococcus thermophilus strain AVA1121]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQYLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=510688 STAVA1121_RS08900 WP_082309153.1 1691222..1691659(-) (comYF) [Streptococcus thermophilus strain AVA1121]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAATACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae Rx1	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae R6	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae TIGR4	48.571	96.552	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.099	97.241	0.448
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434