Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STAVA1121_RS08890 Genome accession   NZ_CP065488
Coordinates   1689926..1690882 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain AVA1121     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1684926..1695882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS08860 (STAVA1121_08740) proC 1685488..1686258 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STAVA1121_RS08865 (STAVA1121_08745) - 1686288..1686950 (-) 663 WP_347131252.1 type II CAAX endopeptidase family protein -
  STAVA1121_RS08870 (STAVA1121_08750) - 1687047..1687490 (-) 444 WP_347131253.1 CAAX protease -
  STAVA1121_RS08875 - 1687564..1687902 (-) 339 WP_347131255.1 CPBP family intramembrane glutamic endopeptidase -
  STAVA1121_RS08880 (STAVA1121_08760) - 1688232..1688429 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  STAVA1121_RS08885 (STAVA1121_08765) - 1688677..1689870 (-) 1194 WP_347131256.1 acetate kinase -
  STAVA1121_RS08890 (STAVA1121_08770) comYH 1689926..1690882 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STAVA1121_RS08895 (STAVA1121_08775) comGG 1690927..1691244 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STAVA1121_RS08900 (STAVA1121_08780) comYF 1691222..1691659 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  STAVA1121_RS08905 (STAVA1121_08785) comGE 1691643..1691936 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STAVA1121_RS08910 (STAVA1121_08790) comYD 1691908..1692336 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STAVA1121_RS08915 (STAVA1121_08795) comYC 1692296..1692622 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STAVA1121_RS08920 (STAVA1121_08800) comGB 1692619..1693718 (-) 1100 Protein_1699 competence type IV pilus assembly protein ComGB -
  STAVA1121_RS08925 (STAVA1121_08805) comGA/cglA/cilD 1693600..1694541 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STAVA1121_RS08930 (STAVA1121_08810) - 1694622..1694984 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=510687 STAVA1121_RS08890 WP_011226622.1 1689926..1690882(-) (comYH) [Streptococcus thermophilus strain AVA1121]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=510687 STAVA1121_RS08890 WP_011226622.1 1689926..1690882(-) (comYH) [Streptococcus thermophilus strain AVA1121]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGACGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682