Detailed information NTG0510567

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: STR1_RS08775
• Genome accession: NZ_CP065486
• Coordinates: 1708969..1710069 (-)
• Length: 366 a.a.
• NCBI ID: WP_120764773.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain R1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1703969..1715069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STR1_RS08730	-	1704294..1704569 (-)	276	WP_011681681.1	hypothetical protein	-
STR1_RS08735 (STR1_08775)	-	1704581..1704778 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STR1_RS08740 (STR1_08780)	-	1705027..1706220 (-)	1194	WP_014608740.1	acetate kinase	-
STR1_RS08745 (STR1_08785)	comYH	1706276..1707232 (-)	957	WP_095559463.1	class I SAM-dependent methyltransferase	Machinery gene
STR1_RS08750 (STR1_08790)	comGG	1707277..1707594 (-)	318	WP_095559464.1	competence type IV pilus minor pilin ComGG	-
STR1_RS08755 (STR1_08795)	comYF	1707572..1708009 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
STR1_RS08760 (STR1_08800)	comGE	1707993..1708286 (-)	294	WP_082309154.1	competence type IV pilus minor pilin ComGE	-
STR1_RS08765 (STR1_08805)	comGD	1708258..1708686 (-)	429	WP_253269448.1	competence type IV pilus minor pilin ComGD	-
STR1_RS08770 (STR1_08810)	comYC	1708646..1708972 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STR1_RS08775 (STR1_08815)	comYB	1708969..1710069 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
STR1_RS08780 (STR1_08820)	comYA	1709951..1710892 (-)	942	WP_084829888.1	competence type IV pilus ATPase ComGA	Machinery gene
STR1_RS08785 (STR1_08825)	-	1710973..1711335 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41876.03 Da
• Isoelectric Point: 10.1377

>NTDB_id=510567 STR1_RS08775 WP_120764773.1 1708969..1710069(-) (comYB) [Streptococcus thermophilus strain R1]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=510567 STR1_RS08775 WP_120764773.1 1708969..1710069(-) (comYB) [Streptococcus thermophilus strain R1]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413