Detailed information NTG0510565

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: STR1_RS08755
• Genome accession: NZ_CP065486
• Coordinates: 1707572..1708009 (-)
• Length: 145 a.a.
• NCBI ID: WP_082309153.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain R1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1702572..1713009

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STR1_RS08715 (STR1_08760)	-	1702636..1703298 (-)	663	WP_023909970.1	type II CAAX endopeptidase family protein	-
STR1_RS08720 (STR1_08765)	-	1703395..1703838 (-)	444	WP_011681680.1	hypothetical protein	-
STR1_RS08725	-	1703912..1704250 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
STR1_RS08730	-	1704294..1704569 (-)	276	WP_011681681.1	hypothetical protein	-
STR1_RS08735 (STR1_08775)	-	1704581..1704778 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STR1_RS08740 (STR1_08780)	-	1705027..1706220 (-)	1194	WP_014608740.1	acetate kinase	-
STR1_RS08745 (STR1_08785)	comYH	1706276..1707232 (-)	957	WP_095559463.1	class I SAM-dependent methyltransferase	Machinery gene
STR1_RS08750 (STR1_08790)	comGG	1707277..1707594 (-)	318	WP_095559464.1	competence type IV pilus minor pilin ComGG	-
STR1_RS08755 (STR1_08795)	comYF	1707572..1708009 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
STR1_RS08760 (STR1_08800)	comGE	1707993..1708286 (-)	294	WP_082309154.1	competence type IV pilus minor pilin ComGE	-
STR1_RS08765 (STR1_08805)	comGD	1708258..1708686 (-)	429	WP_253269448.1	competence type IV pilus minor pilin ComGD	-
STR1_RS08770 (STR1_08810)	comYC	1708646..1708972 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STR1_RS08775 (STR1_08815)	comYB	1708969..1710069 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
STR1_RS08780 (STR1_08820)	comYA	1709951..1710892 (-)	942	WP_084829888.1	competence type IV pilus ATPase ComGA	Machinery gene
STR1_RS08785 (STR1_08825)	-	1710973..1711335 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16423.93 Da
• Isoelectric Point: 8.9531

>NTDB_id=510565 STR1_RS08755 WP_082309153.1 1707572..1708009(-) (comYF) [Streptococcus thermophilus strain R1]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQYLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=510565 STR1_RS08755 WP_082309153.1 1707572..1708009(-) (comYF) [Streptococcus thermophilus strain R1]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAATACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae Rx1	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae R6	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae TIGR4	48.571	96.552	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.099	97.241	0.448
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434