Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STR1_RS08745 Genome accession   NZ_CP065486
Coordinates   1706276..1707232 (-) Length   318 a.a.
NCBI ID   WP_095559463.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701276..1712232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS08710 (STR1_08755) proC 1701836..1702606 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STR1_RS08715 (STR1_08760) - 1702636..1703298 (-) 663 WP_023909970.1 type II CAAX endopeptidase family protein -
  STR1_RS08720 (STR1_08765) - 1703395..1703838 (-) 444 WP_011681680.1 hypothetical protein -
  STR1_RS08725 - 1703912..1704250 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STR1_RS08730 - 1704294..1704569 (-) 276 WP_011681681.1 hypothetical protein -
  STR1_RS08735 (STR1_08775) - 1704581..1704778 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STR1_RS08740 (STR1_08780) - 1705027..1706220 (-) 1194 WP_014608740.1 acetate kinase -
  STR1_RS08745 (STR1_08785) comYH 1706276..1707232 (-) 957 WP_095559463.1 class I SAM-dependent methyltransferase Machinery gene
  STR1_RS08750 (STR1_08790) comGG 1707277..1707594 (-) 318 WP_095559464.1 competence type IV pilus minor pilin ComGG -
  STR1_RS08755 (STR1_08795) comYF 1707572..1708009 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  STR1_RS08760 (STR1_08800) comGE 1707993..1708286 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  STR1_RS08765 (STR1_08805) comGD 1708258..1708686 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  STR1_RS08770 (STR1_08810) comYC 1708646..1708972 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STR1_RS08775 (STR1_08815) comYB 1708969..1710069 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STR1_RS08780 (STR1_08820) comYA 1709951..1710892 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  STR1_RS08785 (STR1_08825) - 1710973..1711335 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35829.98 Da        Isoelectric Point: 4.7123

>NTDB_id=510564 STR1_RS08745 WP_095559463.1 1706276..1707232(-) (comYH) [Streptococcus thermophilus strain R1]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGSKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=510564 STR1_RS08745 WP_095559463.1 1706276..1707232(-) (comYH) [Streptococcus thermophilus strain R1]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAG
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682