Detailed information
Overview
| Name | vicR | Type | Regulator |
| Locus tag | ST4078_RS05405 | Genome accession | NZ_CP065477 |
| Coordinates | 1018488..1019195 (-) | Length | 235 a.a. |
| NCBI ID | WP_011681206.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus strain 4078 | ||
| Function | repress comCDE expression; repress comX expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1013488..1024195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ST4078_RS05380 (ST4078_05355) | yidA | 1013839..1014648 (+) | 810 | WP_011226081.1 | sugar-phosphatase | - |
| ST4078_RS05385 (ST4078_05360) | - | 1014650..1015864 (+) | 1215 | WP_002953123.1 | aminoacyltransferase | - |
| ST4078_RS05390 (ST4078_05365) | - | 1015916..1016277 (-) | 362 | Protein_1008 | YbaN family protein | - |
| ST4078_RS05395 (ST4078_05370) | vicX | 1016337..1017149 (-) | 813 | WP_011681204.1 | MBL fold metallo-hydrolase | Regulator |
| ST4078_RS05400 (ST4078_05375) | vicK | 1017155..1018495 (-) | 1341 | WP_011681205.1 | cell wall metabolism sensor histidine kinase VicK | Regulator |
| ST4078_RS05405 (ST4078_05380) | vicR | 1018488..1019195 (-) | 708 | WP_011681206.1 | response regulator YycF | Regulator |
| ST4078_RS05410 (ST4078_05385) | - | 1019722..1020489 (+) | 768 | WP_014608372.1 | amino acid ABC transporter ATP-binding protein | - |
| ST4078_RS05415 (ST4078_05390) | - | 1020501..1021334 (+) | 834 | WP_014608373.1 | transporter substrate-binding domain-containing protein | - |
| ST4078_RS05420 (ST4078_05395) | - | 1021352..1022050 (+) | 699 | WP_014608374.1 | amino acid ABC transporter permease | - |
| ST4078_RS05425 (ST4078_05400) | - | 1022062..1022712 (+) | 651 | WP_014608375.1 | amino acid ABC transporter permease | - |
| ST4078_RS05430 (ST4078_05405) | endA | 1022784..1023665 (-) | 882 | WP_014608376.1 | DNA/RNA non-specific endonuclease | Machinery gene |
| ST4078_RS05435 (ST4078_05410) | - | 1023727..1023915 (-) | 189 | WP_011226090.1 | DNA-directed RNA polymerase subunit beta | - |
Sequence
Protein
Download Length: 235 a.a. Molecular weight: 27058.98 Da Isoelectric Point: 5.0130
>NTDB_id=510009 ST4078_RS05405 WP_011681206.1 1018488..1019195(-) (vicR) [Streptococcus thermophilus strain 4078]
MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLEVAKEIRKTSHTPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTETIETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVEL
THREFELLFHLATHMGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNYD
MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLEVAKEIRKTSHTPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTETIETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVEL
THREFELLFHLATHMGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNYD
Nucleotide
Download Length: 708 bp
>NTDB_id=510009 ST4078_RS05405 WP_011681206.1 1018488..1019195(-) (vicR) [Streptococcus thermophilus strain 4078]
ATGAAAAAAATTCTAGTTGTTGATGATGAAAGACCAATCTCCGATATCATCAAGTTTAACCTTACTAAGGAGGGTTATGA
AGTGGTTACGGCCTTTGATGGGCGAGAAGCTTTGGAACAATTTGAAGCTAAAAAACCAGACTTGGTTATTCTGGACTTGA
TGTTGCCTGAACTGGATGGTTTGGAAGTTGCCAAGGAAATCCGTAAAACGAGCCACACACCGATTATCATGCTTTCAGCT
AAAGATAGTGAGTTTGATAAGGTTATCGGATTAGAAATTGGGGCAGACGACTATGTGACTAAGCCATTTTCTAACCGTGA
ATTGTTGGCACGTATTAAAGCCCACTTGCGTCGTACAGAAACGATTGAAACCGCAGTAGAAGAGAGCTCTAACTCTGGCA
AACAAGAAATTTCAATTGGTGAGTTGGTTATTGTTCCGGATGCCTTTGTTGCTAAAAAACGTGGAAACGAAGTTGAGTTG
ACCCACCGTGAATTTGAGTTACTCTTCCACTTGGCAACTCATATGGGACAAGTTATGACGCGTGAACATTTGCTTGAAAC
CGTTTGGGGCTATGACTATTTTGGGGATGTTCGTACTGTGGACGTAACGATTCGTCGTCTGCGTGAAAAAATTGAAGATA
CACCTAGCCGTCCTGAATATATCTTGACGCGTCGTGGTGTCGGTTATTACATGAAGAATTATGACTAG
ATGAAAAAAATTCTAGTTGTTGATGATGAAAGACCAATCTCCGATATCATCAAGTTTAACCTTACTAAGGAGGGTTATGA
AGTGGTTACGGCCTTTGATGGGCGAGAAGCTTTGGAACAATTTGAAGCTAAAAAACCAGACTTGGTTATTCTGGACTTGA
TGTTGCCTGAACTGGATGGTTTGGAAGTTGCCAAGGAAATCCGTAAAACGAGCCACACACCGATTATCATGCTTTCAGCT
AAAGATAGTGAGTTTGATAAGGTTATCGGATTAGAAATTGGGGCAGACGACTATGTGACTAAGCCATTTTCTAACCGTGA
ATTGTTGGCACGTATTAAAGCCCACTTGCGTCGTACAGAAACGATTGAAACCGCAGTAGAAGAGAGCTCTAACTCTGGCA
AACAAGAAATTTCAATTGGTGAGTTGGTTATTGTTCCGGATGCCTTTGTTGCTAAAAAACGTGGAAACGAAGTTGAGTTG
ACCCACCGTGAATTTGAGTTACTCTTCCACTTGGCAACTCATATGGGACAAGTTATGACGCGTGAACATTTGCTTGAAAC
CGTTTGGGGCTATGACTATTTTGGGGATGTTCGTACTGTGGACGTAACGATTCGTCGTCTGCGTGAAAAAATTGAAGATA
CACCTAGCCGTCCTGAATATATCTTGACGCGTCGTGGTGTCGGTTATTACATGAAGAATTATGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| vicR | Streptococcus mutans UA159 |
85.532 |
100 |
0.855 |
| micA | Streptococcus pneumoniae Cp1015 |
80.258 |
99.149 |
0.796 |
| covR | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.32 |
98.298 |
0.455 |
| covR | Streptococcus salivarius strain HSISS4 |
45.299 |
99.574 |
0.451 |
| scnR | Streptococcus mutans UA159 |
38.559 |
100 |
0.387 |