Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   D7S_RS02840 Genome accession   NC_017846
Coordinates   611936..612457 (-) Length   173 a.a.
NCBI ID   WP_005562086.1    Uniprot ID   A0AAC8Y0V5
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606936..617457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS02825 (D7S_00616) comQ 610237..610539 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  D7S_RS02830 (D7S_00617) - 610514..611209 (-) 696 WP_005537951.1 DUF2572 family protein -
  D7S_RS02835 (D7S_00618) - 611206..611949 (-) 744 WP_005549806.1 type II secretion system protein J -
  D7S_RS02840 (D7S_00619) comN 611936..612457 (-) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  D7S_RS02860 (D7S_00623) pal 613162..613629 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  D7S_RS02865 (D7S_00624) tolB 613644..614924 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  D7S_RS02870 (D7S_00625) tolA 614959..616107 (-) 1149 WP_005549166.1 cell envelope integrity protein TolA -
  D7S_RS02875 (D7S_00626) tolR 616124..616546 (-) 423 WP_005542289.1 colicin uptake protein TolR -
  D7S_RS02880 (D7S_00627) tolQ 616632..617321 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19865.08 Da        Isoelectric Point: 8.7359

>NTDB_id=50955 D7S_RS02840 WP_005562086.1 611936..612457(-) (comN) [Aggregatibacter actinomycetemcomitans D7S-1]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVFAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTTSTTCFVLQANQQRTLFSFFNVGSLKLK
GNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=50955 D7S_RS02840 WP_005562086.1 611936..612457(-) (comN) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGCAAAAAGGATTCACTTTGCTGGAAATGTTAATTGCATTATTTATTATCAGCCTGTTGCTGACGCTTGCTTTACCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACGGCGCAA
ATTAAAAATAGCCATTTGTGTGACTGTTTAAATCCTGTTGCTTGCCCGCAAAATGTTTTCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACCGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGACTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAA
GGTAATCAATCTTTGAGTGCTTGCGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment