Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   D7S_RS02825 Genome accession   NC_017846
Coordinates   610237..610539 (-) Length   100 a.a.
NCBI ID   WP_005554585.1    Uniprot ID   A0A142G259
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 605237..615539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS02810 (D7S_00612) - 605910..606347 (+) 438 WP_005549811.1 DNA polymerase III subunit psi -
  D7S_RS02815 (D7S_00614) rimI 606357..606800 (+) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  D7S_RS02820 (D7S_00615) recC 606802..610191 (-) 3390 WP_005537947.1 exodeoxyribonuclease V subunit gamma -
  D7S_RS02825 (D7S_00616) comQ 610237..610539 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  D7S_RS02830 (D7S_00617) - 610514..611209 (-) 696 WP_005537951.1 DUF2572 family protein -
  D7S_RS02835 (D7S_00618) - 611206..611949 (-) 744 WP_005549806.1 type II secretion system protein J -
  D7S_RS02840 (D7S_00619) comN 611936..612457 (-) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  D7S_RS02860 (D7S_00623) pal 613162..613629 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  D7S_RS02865 (D7S_00624) tolB 613644..614924 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11675.61 Da        Isoelectric Point: 10.6243

>NTDB_id=50954 D7S_RS02825 WP_005554585.1 610237..610539(-) (comQ) [Aggregatibacter actinomycetemcomitans D7S-1]
MILRLRKIDYKGMSLLSLLVTLSLFSGLFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVVCSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=50954 D7S_RS02825 WP_005554585.1 610237..610539(-) (comQ) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGATTTTGCGGTTACGGAAAATTGATTACAAAGGCATGAGCCTATTGTCTTTGTTGGTTACGTTGAGCTTATTCAGCGG
GCTTTTTCTCACCTTCAATCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTCCTTGGATTGCCTTGTGAATCGCAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGGTTTGTTCGCAAAATCAGGTGTCGGTGAAATATCCTCGTGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G259

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.122

98

0.55

Multiple sequence alignment