Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   SMULJ23_RS10375 Genome accession   NC_017768
Coordinates   346529..346885 (-) Length   118 a.a.
NCBI ID   WP_002270703.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 341529..351885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS01560 (SMULJ23_0297) - 341705..341950 (+) 246 WP_002263367.1 hypothetical protein -
  SMULJ23_RS01565 (SMULJ23_0298) rpsF 342106..342396 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  SMULJ23_RS01570 (SMULJ23_0299) ssbA 342414..342908 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  SMULJ23_RS01575 (SMULJ23_0300) rpsR 342938..343177 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMULJ23_RS01580 (SMULJ23_0301) - 343444..344646 (-) 1203 WP_014677767.1 IS110 family transposase -
  SMULJ23_RS01585 (SMULJ23_0303) - 345119..345838 (+) 720 WP_014677769.1 TraX family protein -
  SMULJ23_RS01590 (SMULJ23_0304) hdrM 345846..346532 (-) 687 WP_014677770.1 hdrR negative regulator HdrM Regulator
  SMULJ23_RS10375 (SMULJ23_0305) hdrR 346529..346885 (-) 357 WP_002270703.1 LytTR family transcriptional regulator HdrR Regulator
  SMULJ23_RS01600 (SMULJ23_0306) - 347024..347686 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -
  SMULJ23_RS01605 (SMULJ23_0307) - 347968..348912 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -
  SMULJ23_RS01610 - 349312..349533 (-) 222 WP_019312622.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14137.45 Da        Isoelectric Point: 10.3603

>NTDB_id=50792 SMULJ23_RS10375 WP_002270703.1 346529..346885(-) (hdrR) [Streptococcus mutans LJ23]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEISNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEIST
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=50792 SMULJ23_RS10375 WP_002270703.1 346529..346885(-) (hdrR) [Streptococcus mutans LJ23]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAGCAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTACC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

98.305

100

0.983

Multiple sequence alignment