Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   I2437_RS03020 Genome accession   NZ_CP065061
Coordinates   595213..595923 (+) Length   236 a.a.
NCBI ID   WP_012515994.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 590213..600923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS03000 (IEMOCGPF_00594) - 591040..591579 (+) 540 WP_021320995.1 hypothetical protein -
  I2437_RS03005 (IEMOCGPF_00595) - 591576..592691 (+) 1116 WP_165627933.1 acetyl-CoA C-acyltransferase -
  I2437_RS03010 (IEMOCGPF_00596) - 592681..593943 (+) 1263 WP_043053280.1 AMP-binding protein -
  I2437_RS03015 (IEMOCGPF_00597) - 593988..595004 (+) 1017 WP_042671148.1 DUF3114 domain-containing protein -
  I2437_RS03020 (IEMOCGPF_00598) vicR 595213..595923 (+) 711 WP_012515994.1 response regulator YycF Regulator
  I2437_RS03025 (IEMOCGPF_00599) vicK 595916..597268 (+) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I2437_RS03030 (IEMOCGPF_00600) vicX 597272..598081 (+) 810 WP_206157948.1 MBL fold metallo-hydrolase Regulator
  I2437_RS03035 (IEMOCGPF_00601) - 598272..600014 (+) 1743 WP_012677638.1 restriction endonuclease FokI C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26981.84 Da        Isoelectric Point: 4.9038

>NTDB_id=506598 I2437_RS03020 WP_012515994.1 595213..595923(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=506598 I2437_RS03020 WP_012515994.1 595213..595923(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
ATGAAGAAAATACTGATTGTTGATGATGAAAAGCCGATTTCTGATATCATTAAATTTAATCTGACAAAGGAAGGCTATGA
TACGGTCACAGCATTTGATGGCAAAGAGGCCGTTGCAGTCTTTGAAGAGGAAAAGCCAGATTTGATTATTTTGGATTTGA
TGCTTCCTGAATTAGATGGCCTTGAGGTAGCCAAGGAAATCCGCAAGACCAGCCATATTCCTATCATCATGCTATCTGCT
AAGGATAGCGAATTTGATAAGGTGATTGGACTTGAAATAGGGGCTGATGATTATGTGACTAAGCCCTTTTCAAATCGTGA
GCTGCTGGCGCGTGTCAAGGCACATTTGCGTCGGACAGAGACTATTGAGACAGCAGTAGCCGAAGAAAATGCCTCCTCAG
GCTCTCAGGAGCTAACCATCGGCAATCTACAGATTTTACCAGATGCCTTTATCGCTAAAAAGCATGGTCAAGAGGTTGAG
CTGACCCATCGTGAGTTTGAATTGCTGCATCATCTGGCAAACCATATCGGACAGGTCATGACACGTGAGCATTTGCTTGA
GACCGTATGGGGCTACGATTATTTTGGCGATGTCCGAACCGTTGACGTTACTATCCGTCGCCTGCGCGAAAAAATAGAGG
ATACACCGAGTCGTCCAGAGTATATTTTGACAAGACGTGGTGTTGGGTACTACATGAAGGCTTATGACTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

88.983

100

0.89
  micA Streptococcus pneumoniae Cp1015

78.112

98.729

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.828

98.305

0.441
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

38.034

99.153

0.377