Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I2434_RS08505 Genome accession   NZ_CP065058
Coordinates   1794517..1796493 (-) Length   658 a.a.
NCBI ID   WP_111710811.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ18     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1789517..1801493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2434_RS08485 (MCPGFBBE_01706) amiF 1790033..1790956 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2434_RS08490 (MCPGFBBE_01707) amiE 1790949..1792019 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2434_RS08495 (MCPGFBBE_01708) amiD 1792028..1792954 (-) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  I2434_RS08500 (MCPGFBBE_01709) amiC 1792954..1794453 (-) 1500 WP_012677389.1 ABC transporter permease Regulator
  I2434_RS08505 (MCPGFBBE_01710) amiA3 1794517..1796493 (-) 1977 WP_111710811.1 peptide ABC transporter substrate-binding protein Regulator
  I2434_RS08510 (MCPGFBBE_01711) pbp3 1796801..1798039 (+) 1239 WP_041785731.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I2434_RS08515 (MCPGFBBE_01712) pbp3 1798363..1799598 (+) 1236 WP_012516284.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I2434_RS08520 (MCPGFBBE_01713) - 1799682..1800863 (+) 1182 WP_012516285.1 serine hydrolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72861.24 Da        Isoelectric Point: 5.0136

>NTDB_id=506448 I2434_RS08505 WP_111710811.1 1794517..1796493(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MKKSKWLATLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNDITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTFYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKALRSTLVPPTFVQIGDKDFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQRDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKIVPFSGAFAWAGTKNDFYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEEYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=506448 I2434_RS08505 WP_111710811.1 1794517..1796493(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGAAGAAAAGTAAATGGTTGGCAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGACATAACAACAAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCGCTTGACAAAAAAACGGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATTC
TGTATAATGGCCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATCGAGCTTGTCAAAAACGAAAACTATTGGGAC
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACCTTTTACGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGAGCTTACTCAGCGGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAAGCGCTTCGTAGCACACTTGTACCACCGACAT
TTGTGCAAATTGGCGACAAAGACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTG
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAAAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGCGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAGAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGACTA
TGTCGACCCATCATCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGTAAGATTACTGAT
GATCTCAATGCCCGCTATACGCTCTACGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCAACTATCTC
ACTTGGTGGAACACCACGTGTGACTAAAATCGTACCGTTTTCAGGTGCCTTTGCTTGGGCTGGTACTAAAAATGACTTTT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAGAATATAACAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.515

100

0.567
  amiA3 Streptococcus thermophilus LMD-9

56.212

100

0.564
  amiA Streptococcus salivarius strain HSISS4

56.146

100

0.562