Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I2434_RS08485 Genome accession   NZ_CP065058
Coordinates   1790033..1790956 (-) Length   307 a.a.
NCBI ID   WP_012516278.1    Uniprot ID   A0AAW3GKE0
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785033..1795956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2434_RS08485 (MCPGFBBE_01706) amiF 1790033..1790956 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2434_RS08490 (MCPGFBBE_01707) amiE 1790949..1792019 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2434_RS08495 (MCPGFBBE_01708) amiD 1792028..1792954 (-) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  I2434_RS08500 (MCPGFBBE_01709) amiC 1792954..1794453 (-) 1500 WP_012677389.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34670.89 Da        Isoelectric Point: 6.9308

>NTDB_id=506444 I2434_RS08485 WP_012516278.1 1790033..1790956(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=506444 I2434_RS08485 WP_012516278.1 1790033..1790956(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAGTCAGGCAGTGGAAAGACAACAATCGGTCGTG
CCATCATTGGTTTAAATGAAACAAGCTCAGGCGAAATCCGCTATGACGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAAACAGAAGACGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGT
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
TCAGGTCTTGAACCTGTTGAAGAAAATACAGGCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCAGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGCTGTCAGCGGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTTTATCATCCAGAGCAGCATGATTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCAGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

83.007

99.674

0.827
  amiF Streptococcus thermophilus LMD-9

82.68

99.674

0.824
  amiF Streptococcus salivarius strain HSISS4

82.68

99.674

0.824