Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I2434_RS08500 Genome accession   NZ_CP065058
Coordinates   1792954..1794453 (-) Length   499 a.a.
NCBI ID   WP_012677389.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1787954..1799453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2434_RS08485 (MCPGFBBE_01706) amiF 1790033..1790956 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2434_RS08490 (MCPGFBBE_01707) amiE 1790949..1792019 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2434_RS08495 (MCPGFBBE_01708) amiD 1792028..1792954 (-) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  I2434_RS08500 (MCPGFBBE_01709) amiC 1792954..1794453 (-) 1500 WP_012677389.1 ABC transporter permease Regulator
  I2434_RS08505 (MCPGFBBE_01710) amiA3 1794517..1796493 (-) 1977 WP_111710811.1 peptide ABC transporter substrate-binding protein Regulator
  I2434_RS08510 (MCPGFBBE_01711) pbp3 1796801..1798039 (+) 1239 WP_041785731.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55650.10 Da        Isoelectric Point: 10.1102

>NTDB_id=506447 I2434_RS08500 WP_012677389.1 1792954..1794453(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MKKYIFERILRSLVSILLVTALTYTIVFTLVPKSLIFKQDPNYNKMVTTPDKKTNYLNTVFENMGYISYYSSKELQNKAS
KLDPSVTTAPTKANEKIYQKYIASIGNGWKLGRFTESKGFYAVREIPIYERVWNFFSHLVVIDHPWKIKDPKNPNLERYV
RPEIDPAVGPALVGSGTKHKYLIYFNKQFPFIHQNIITFDLGVSYPTYANIPVVQVITQGQGRTLQKEVTFPTGKTKLSS
IDIYSRTYKTPSSLDSKDIANFGKGDAYTNTQNNYAEPSMIANSFKIGIVGVLLSYLFGLPIGMLMAYYKNGWFDRFSTA
ATTFMLALPSIALIYIVRFVGSYLGLPDTFPLLGAGDVRSYVLPALILGILGTPSTVVWFRRYIVDLQGSDFVRFARAKG
LSEFEISKNHLFKQAMVPIVNGIPQAIVGTIAGATLTETVFAFPGMGKMLIDSIKAANNSMVVGLVFIFAVLSILALLVG
DILMTILDPRIKLSGKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=506447 I2434_RS08500 WP_012677389.1 1792954..1794453(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGAAAAAATACATATTTGAACGCATATTGAGGTCGCTTGTTTCAATCCTGCTGGTAACCGCACTAACCTATACTATTGT
CTTTACCTTAGTGCCAAAAAGCTTGATTTTTAAGCAAGACCCTAATTACAATAAAATGGTGACAACACCTGATAAGAAAA
CCAATTATCTAAATACTGTTTTTGAAAATATGGGCTATATTTCCTATTACAGCAGTAAAGAACTGCAGAATAAGGCTTCA
AAGCTTGATCCTTCTGTAACAACTGCACCAACTAAGGCCAATGAAAAAATATATCAAAAATATATTGCTTCTATCGGTAA
TGGTTGGAAGCTTGGGCGCTTTACAGAAAGTAAGGGATTTTATGCGGTTAGAGAGATTCCAATCTATGAGCGCGTGTGGA
ATTTCTTTAGCCATTTGGTTGTCATTGATCACCCATGGAAAATCAAGGATCCAAAAAATCCAAATCTAGAGCGTTATGTG
CGACCAGAAATTGACCCTGCTGTTGGTCCGGCCTTAGTTGGCTCTGGTACTAAGCACAAATACTTGATTTACTTCAACAA
GCAATTCCCATTTATCCATCAAAATATCATAACCTTTGATTTGGGAGTGTCCTATCCAACCTATGCCAATATTCCAGTTG
TTCAGGTTATCACTCAAGGACAAGGAAGAACACTTCAAAAAGAGGTCACCTTCCCAACAGGCAAAACAAAGCTGTCTTCA
ATTGATATTTACTCTCGAACCTATAAAACACCAAGCTCTTTAGATAGCAAGGATATTGCCAATTTTGGTAAGGGTGATGC
TTATACCAATACACAAAATAACTATGCAGAGCCATCTATGATTGCAAATTCCTTTAAGATTGGTATTGTCGGTGTCTTGT
TGTCCTATCTTTTTGGTTTGCCAATTGGTATGCTGATGGCTTATTATAAGAATGGCTGGTTTGACCGCTTTTCAACGGCT
GCCACAACCTTTATGTTAGCCCTGCCAAGCATTGCGCTTATCTATATTGTTCGATTTGTCGGTTCTTATTTGGGCTTGCC
AGATACCTTTCCGCTGCTAGGAGCAGGAGATGTTAGGTCTTATGTGCTGCCTGCTCTTATATTAGGAATTCTTGGTACAC
CAAGTACAGTAGTTTGGTTCCGACGCTATATTGTGGACTTGCAAGGCAGTGATTTTGTTCGCTTTGCACGAGCAAAGGGG
CTTTCAGAATTTGAGATTTCAAAAAATCATCTCTTTAAGCAGGCTATGGTGCCTATTGTTAACGGTATTCCACAAGCCAT
TGTCGGAACAATTGCCGGTGCAACCTTGACAGAGACCGTCTTTGCTTTCCCAGGAATGGGTAAAATGCTGATTGATTCCA
TAAAAGCTGCTAATAACTCTATGGTTGTTGGTCTTGTCTTTATTTTTGCTGTTTTATCAATATTAGCCTTGCTAGTAGGT
GATATTCTTATGACAATTTTAGATCCACGTATTAAATTATCAGGTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.325

100

0.623
  amiC Streptococcus thermophilus LMD-9

62.124

100

0.621