Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I2434_RS08490 Genome accession   NZ_CP065058
Coordinates   1790949..1792019 (-) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785949..1797019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2434_RS08485 (MCPGFBBE_01706) amiF 1790033..1790956 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2434_RS08490 (MCPGFBBE_01707) amiE 1790949..1792019 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2434_RS08495 (MCPGFBBE_01708) amiD 1792028..1792954 (-) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  I2434_RS08500 (MCPGFBBE_01709) amiC 1792954..1794453 (-) 1500 WP_012677389.1 ABC transporter permease Regulator
  I2434_RS08505 (MCPGFBBE_01710) amiA3 1794517..1796493 (-) 1977 WP_111710811.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=506445 I2434_RS08490 WP_012516279.1 1790949..1792019(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=506445 I2434_RS08490 WP_012516279.1 1790949..1792019(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGTGATGTTTCTCTTGATTTGTACAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCGGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAGGACTGGGAAGCTATCCGCGGCTCTAAAATTGCTACTATTTTCCAGGATCCAATGACTAG
TCTAGATCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCAATCGACTATATGACAAGGGTCGGTATTCCTGAGCCGGAAAAGCGCTTTGGAGAGTATCCTTTCCAATAT
TCTGGTGGTATGAGACAGCGTATCGTTATTGCCATTGCCCTAGCCTGTAAGCCAGATATTCTTATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATTCAGGCTCAGATTATTGACCTGTTAAAGACACTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGACAAGGTTGCTGTTATGTATGCAGGGGAGATTATCGAG
TATGGGAAGGTTGAAGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCTTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCAGGGACACCTCCGTCCTTGTATAAGCCGATTGTTGGGGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCATTGGGCAAAA
ACTTGGCTGTTACATCCAGATGCACCTAAGGTTCAAAAGCCGGCTGTTATCCAAGATTTGCATCAAAAAATATTAAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528