Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IVB58_RS16525 Genome accession   NZ_CP065051
Coordinates   3488550..3489032 (-) Length   160 a.a.
NCBI ID   WP_001046414.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3483550..3494032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS16490 (IVB58_16440) - 3483659..3484690 (+) 1032 WP_002007674.1 lipase secretion chaperone -
  IVB58_RS16495 (IVB58_16445) - 3484805..3485746 (+) 942 WP_085916958.1 triacylglycerol lipase -
  IVB58_RS16500 (IVB58_16450) rplS 3485799..3486167 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  IVB58_RS16505 (IVB58_16455) trmD 3486376..3487116 (-) 741 WP_000464600.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IVB58_RS16510 (IVB58_16460) rimM 3487162..3487710 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  IVB58_RS16515 (IVB58_16465) rpsP 3487730..3487981 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  IVB58_RS16520 (IVB58_16470) pilE 3488128..3488553 (-) 426 WP_000788335.1 type IV pilin protein Machinery gene
  IVB58_RS16525 (IVB58_16475) pilY2 3488550..3489032 (-) 483 WP_001046414.1 type IV pilin protein Machinery gene
  IVB58_RS16530 (IVB58_16480) pilY1 3489045..3492899 (-) 3855 WP_000768947.1 PilC/PilY family type IV pilus protein Machinery gene
  IVB58_RS16535 (IVB58_16485) pilX 3492911..3493729 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17632.89 Da        Isoelectric Point: 8.8351

>NTDB_id=506237 IVB58_RS16525 WP_001046414.1 3488550..3489032(-) (pilY2) [Acinetobacter baumannii strain 2016GDAB1]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGSTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=506237 IVB58_RS16525 WP_001046414.1 3488550..3489032(-) (pilY2) [Acinetobacter baumannii strain 2016GDAB1]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTAGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

40.698

100

0.438