Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I0509_RS06915 Genome accession   NZ_CP065028
Coordinates   1401175..1402419 (+) Length   414 a.a.
NCBI ID   WP_077955456.1    Uniprot ID   -
Organism   Listeria monocytogenes strain UKVDL9     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1396175..1407419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0509_RS06895 (I0509_06895) yfmH 1397349..1398635 (+) 1287 WP_070217239.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I0509_RS06900 (I0509_06900) ymfI 1398728..1399459 (+) 732 WP_003730600.1 elongation factor P 5-aminopentanone reductase -
  I0509_RS06905 (I0509_06905) - 1399510..1400439 (+) 930 WP_070238970.1 helix-turn-helix domain-containing protein -
  I0509_RS06910 (I0509_06910) pgsA 1400530..1401108 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I0509_RS06915 (I0509_06915) cinA 1401175..1402419 (+) 1245 WP_077955456.1 competence/damage-inducible protein A Machinery gene
  I0509_RS06920 (I0509_06920) recA 1402692..1403738 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  I0509_RS06925 (I0509_06925) rny 1404039..1405601 (+) 1563 WP_003738907.1 ribonuclease Y -
  I0509_RS06930 (I0509_06930) - 1405715..1406212 (+) 498 WP_070264712.1 GNAT family N-acetyltransferase -
  I0509_RS06935 (I0509_06935) - 1406217..1407020 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  I0509_RS06940 (I0509_06940) - 1407037..1407399 (+) 363 WP_003721907.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45556.70 Da        Isoelectric Point: 4.6520

>NTDB_id=505828 I0509_RS06915 WP_077955456.1 1401175..1402419(+) (cinA) [Listeria monocytogenes strain UKVDL9]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEILHRDGSFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGCETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=505828 I0509_RS06915 WP_077955456.1 1401175..1402419(+) (cinA) [Listeria monocytogenes strain UKVDL9]
TTGGCAAGTGCGGAAATCATTGCTGTAGGAACAGAACTATTACTTGGACAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTAGTTGGAGATAATCCGGCGCGTTTAAAAGAAGTAA
TTGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTAGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTTACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTACTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAATCGCAATTAGCTGCTGATTTAAATGATTTAATTGTCACACAAGTCAACCCGACGATTGCGACCTATG
CTGGTGATAATGAAGTCGTAGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGATACC
GAGGAAGAAATATTGCACCGAGATGGTAGCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTTACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAGGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCAAAAGAAATGGCTGAAAATGTAAGTCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCGGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGTACTATTTGGATTGGGC
TAAGCGTTAAAGGTTGTGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGACGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCGAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.792

0.507
  cinA Streptococcus pneumoniae TIGR4

49.048

100

0.498
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus mitis SK321

48.441

100

0.488
  cinA Streptococcus mitis NCTC 12261

48.325

100

0.488
  cinA Streptococcus mutans UA159

48.544

99.517

0.483
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386