Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I0509_RS06765 Genome accession   NZ_CP065028
Coordinates   1367972..1369663 (+) Length   563 a.a.
NCBI ID   WP_070264700.1    Uniprot ID   -
Organism   Listeria monocytogenes strain UKVDL9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1362972..1374663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0509_RS06740 (I0509_06740) - 1363122..1364003 (+) 882 WP_012581362.1 polyprenyl synthetase family protein -
  I0509_RS06745 (I0509_06745) - 1364202..1364402 (+) 201 WP_003719639.1 cold-shock protein -
  I0509_RS06750 (I0509_06750) dxs 1364569..1366488 (+) 1920 WP_077955463.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I0509_RS06755 (I0509_06755) - 1366485..1367309 (+) 825 WP_070264698.1 TlyA family RNA methyltransferase -
  I0509_RS06760 (I0509_06760) ahrC 1367500..1367949 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  I0509_RS06765 (I0509_06765) recN 1367972..1369663 (+) 1692 WP_070264700.1 DNA repair protein RecN Machinery gene
  I0509_RS06770 (I0509_06770) - 1369793..1370659 (+) 867 WP_070223853.1 phosphate acyltransferase -
  I0509_RS06775 (I0509_06775) buk 1370796..1371863 (+) 1068 WP_069889398.1 butyrate kinase -
  I0509_RS06780 (I0509_06780) lpdA 1371878..1373305 (+) 1428 WP_070214999.1 dihydrolipoyl dehydrogenase -
  I0509_RS06785 (I0509_06785) - 1373330..1374325 (+) 996 WP_070264702.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63498.23 Da        Isoelectric Point: 5.1921

>NTDB_id=505826 I0509_RS06765 WP_070264700.1 1367972..1369663(+) (recN) [Listeria monocytogenes strain UKVDL9]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEENRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVHFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=505826 I0509_RS06765 WP_070264700.1 1367972..1369663(+) (recN) [Listeria monocytogenes strain UKVDL9]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAGCGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTTGCTTCTGACAAAATAAAGCCAGCATTA
ACCAAGTACCAAACGAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGAGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCTAATTTGCAAGCTGGTGAAGAAAATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGCCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGTCAAATTAGGCAATCACTGGATCAGCTCG
AATTCCAACCAGAAGAGCTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGAAAAACC
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTAAAAGCAGAACTAACAAAACAGGCGAACACACTAACAGAAATCCGTAAAAAAGCGG
CTGTAACGTTAGAAAAGCAAATCAAACAAGAATTAAATCACTTATATATGGAGAAAGCCATTTTTAGTGTACACTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGTCACTTACCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACAAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGAGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535