Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IT774_RS18115 Genome accession   NZ_CP064795
Coordinates   3724441..3724566 (+) Length   41 a.a.
NCBI ID   WP_408641223.1    Uniprot ID   -
Organism   Salinimonas marina strain G2-b     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3719441..3729566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT774_RS16775 (IT774_16775) fmt 3720594..3721573 (-) 980 Protein_3348 methionyl-tRNA formyltransferase -
  IT774_RS16780 (IT774_16780) def 3721582..3722091 (-) 510 WP_195810776.1 peptide deformylase -
  IT774_RS16785 (IT774_16785) - 3722288..3723268 (+) 981 WP_232365044.1 LysM peptidoglycan-binding domain-containing protein -
  IT774_RS17650 - 3723734..3724239 (+) 506 Protein_3351 DNA-processing protein DprA -
  IT774_RS18115 dprA 3724441..3724566 (+) 126 WP_408641223.1 hypothetical protein Machinery gene
  IT774_RS16800 (IT774_16800) - 3724568..3725044 (+) 477 WP_195810779.1 DUF494 family protein -
  IT774_RS16805 (IT774_16805) - 3725075..3725617 (+) 543 WP_195810780.1 type I DNA topoisomerase -
  IT774_RS16810 (IT774_16810) - 3725627..3726187 (+) 561 WP_195810781.1 Sua5/YciO/YrdC/YwlC family protein -
  IT774_RS16815 (IT774_16815) hemF 3726189..3727102 (+) 914 Protein_3356 oxygen-dependent coproporphyrinogen oxidase -
  IT774_RS16820 (IT774_16820) - 3727544..3727975 (-) 432 WP_195810782.1 group II truncated hemoglobin -
  IT774_RS16825 (IT774_16825) aroE 3728004..3728825 (+) 822 WP_232365045.1 shikimate dehydrogenase -
  IT774_RS16830 (IT774_16830) - 3728814..3729356 (-) 543 WP_195810784.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4480.29 Da        Isoelectric Point: 8.6215

>NTDB_id=504863 IT774_RS18115 WP_408641223.1 3724441..3724566(+) (dprA) [Salinimonas marina strain G2-b]
MDIITERSNLPVSEVLASLLHYELRGLVAAVPGGYIKLRGK

Nucleotide


Download         Length: 126 bp        

>NTDB_id=504863 IT774_RS18115 WP_408641223.1 3724441..3724566(+) (dprA) [Salinimonas marina strain G2-b]
GTGGACATCATAACCGAGCGCAGCAATCTACCAGTTTCAGAAGTTCTGGCATCTTTATTACACTATGAGTTGCGTGGTTT
GGTAGCCGCGGTTCCTGGTGGCTATATCAAGTTGAGGGGGAAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

54.054

90.244

0.488
  dprA Vibrio cholerae strain A1552

48.649

90.244

0.439
  dprA Legionella pneumophila strain ERS1305867

45.946

90.244

0.415
  dprA Neisseria meningitidis strain C311

41.026

95.122

0.39
  dprA Neisseria meningitidis MC58

41.026

95.122

0.39
  dprA Acinetobacter baumannii strain A118

38.462

95.122

0.366
  dprA Acinetobacter baumannii D1279779

38.462

95.122

0.366