Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ITP52_RS01985 Genome accession   NZ_CP064818
Coordinates   460895..461674 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SH1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 455895..466674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS01955 (ITP52_01955) fliH 455913..456665 (-) 753 WP_032725764.1 flagellar assembly protein FliH -
  ITP52_RS01960 (ITP52_01960) fliG 456658..457674 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ITP52_RS01965 (ITP52_01965) fliF 457687..459297 (-) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  ITP52_RS01970 (ITP52_01970) fliE 459343..459663 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ITP52_RS01975 (ITP52_01975) flgC 459674..460126 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  ITP52_RS01980 (ITP52_01980) flgB 460126..460515 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ITP52_RS01985 (ITP52_01985) codY 460895..461674 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ITP52_RS01990 (ITP52_01990) hslU 461714..463126 (-) 1413 WP_258712685.1 HslU--HslV peptidase ATPase subunit -
  ITP52_RS01995 (ITP52_01995) clpQ 463134..463679 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ITP52_RS02000 (ITP52_02000) xerC 463692..464606 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  ITP52_RS02005 (ITP52_02005) trmFO 464674..465981 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=504867 ITP52_RS01985 WP_003220850.1 460895..461674(-) (codY) [Bacillus subtilis strain SH1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=504867 ITP52_RS01985 WP_003220850.1 460895..461674(-) (codY) [Bacillus subtilis strain SH1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467