Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ITP52_RS00440 Genome accession   NZ_CP064818
Coordinates   72820..73950 (-) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 67820..78950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS00405 (ITP52_00405) yobQ 67990..68715 (+) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  ITP52_RS00410 (ITP52_00410) csaA 68780..69112 (+) 333 WP_032725963.1 chaperone CsaA -
  ITP52_RS00415 (ITP52_00415) aoxN 69362..70798 (-) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  ITP52_RS00420 (ITP52_00420) yobM 70926..71483 (+) 558 WP_038829958.1 SMI1/KNR4 family protein -
  ITP52_RS00425 (ITP52_00425) - 71584..71739 (+) 156 Protein_83 T7SS effector LXG polymorphic toxin -
  ITP52_RS22130 - 71737..72111 (+) 375 Protein_84 UV damage repair protein UvrX -
  ITP52_RS22135 - 72333..72533 (+) 201 WP_021481449.1 hypothetical protein -
  ITP52_RS00435 (ITP52_00435) - 72687..72830 (-) 144 WP_153801665.1 hypothetical protein -
  ITP52_RS00440 (ITP52_00440) rapC 72820..73950 (-) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  ITP52_RS22385 (ITP52_00445) - 74083..74229 (-) 147 Protein_88 phage holin -
  ITP52_RS00450 (ITP52_00450) - 74941..75315 (-) 375 WP_021481445.1 YoqO family protein -
  ITP52_RS00455 (ITP52_00455) - 75589..75864 (-) 276 Protein_90 SOS response-associated peptidase family protein -
  ITP52_RS00460 (ITP52_00460) - 76045..76410 (-) 366 WP_038829962.1 hypothetical protein -
  ITP52_RS00465 (ITP52_00465) - 77056..77757 (+) 702 WP_038829963.1 hypothetical protein -
  ITP52_RS00470 (ITP52_00470) - 77958..78184 (+) 227 Protein_93 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=504864 ITP52_RS00440 WP_021481447.1 72820..73950(-) (rapC) [Bacillus subtilis strain SH1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=504864 ITP52_RS00440 WP_021481447.1 72820..73950(-) (rapC) [Bacillus subtilis strain SH1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455