Detailed information NTG0504864

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ITP52_RS00440
• Genome accession: NZ_CP064818
• Coordinates: 72820..73950 (-)
• Length: 376 a.a.
• NCBI ID: WP_021481447.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SH1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	70920..75315	72820..73950	within	0

Gene organization within MGE regions

Location: 70920..75315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITP52_RS00420 (ITP52_00420)	yobM	70926..71483 (+)	558	WP_038829958.1	SMI1/KNR4 family protein	-
ITP52_RS00425 (ITP52_00425)	-	71584..71739 (+)	156	Protein_83	T7SS effector LXG polymorphic toxin	-
ITP52_RS22130	-	71737..72111 (+)	375	Protein_84	UV damage repair protein UvrX	-
ITP52_RS22135	-	72333..72533 (+)	201	WP_021481449.1	hypothetical protein	-
ITP52_RS00435 (ITP52_00435)	-	72687..72830 (-)	144	WP_153801665.1	hypothetical protein	-
ITP52_RS00440 (ITP52_00440)	rapC	72820..73950 (-)	1131	WP_021481447.1	tetratricopeptide repeat protein	Regulator
ITP52_RS22385 (ITP52_00445)	-	74083..74229 (-)	147	Protein_88	phage holin	-
ITP52_RS00450 (ITP52_00450)	-	74941..75315 (-)	375	WP_021481445.1	YoqO family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44393.16 Da
• Isoelectric Point: 5.8915

>NTDB_id=504864 ITP52_RS00440 WP_021481447.1 72820..73950(-) (rapC) [Bacillus subtilis strain SH1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=504864 ITP52_RS00440 WP_021481447.1 72820..73950(-) (rapC) [Bacillus subtilis strain SH1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	51.064	100	0.511
rapF	Bacillus subtilis subsp. subtilis str. 168	45.119	100	0.455