Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IWH25_RS18860 Genome accession   NZ_CP064781
Coordinates   3952086..3952544 (-) Length   152 a.a.
NCBI ID   WP_203387297.1    Uniprot ID   A0A974SNW9
Organism   Azospira restricta strain DSM 18626     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3947086..3957544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IWH25_RS18830 (IWH25_18820) - 3947662..3948564 (-) 903 WP_238998957.1 ethylbenzene dehydrogenase-related protein -
  IWH25_RS18835 (IWH25_18825) - 3948561..3949019 (-) 459 WP_203387292.1 cupredoxin domain-containing protein -
  IWH25_RS18840 (IWH25_18830) - 3949195..3949512 (+) 318 WP_203387293.1 hypothetical protein -
  IWH25_RS18845 (IWH25_18835) - 3949582..3950340 (-) 759 WP_203387294.1 amino acid ABC transporter ATP-binding protein -
  IWH25_RS18850 (IWH25_18840) - 3950345..3950998 (-) 654 WP_203387295.1 amino acid ABC transporter permease -
  IWH25_RS18855 (IWH25_18845) - 3951068..3951865 (-) 798 WP_203387296.1 amino acid ABC transporter substrate-binding protein -
  IWH25_RS18860 (IWH25_18850) ssb 3952086..3952544 (-) 459 WP_203387297.1 single-stranded DNA-binding protein Machinery gene
  IWH25_RS18865 (IWH25_18855) - 3952574..3953794 (-) 1221 WP_238998958.1 MFS transporter -
  IWH25_RS18870 (IWH25_18860) uvrA 3953872..3956706 (+) 2835 WP_203387298.1 excinuclease ABC subunit UvrA -
  IWH25_RS18875 (IWH25_18865) - 3956703..3957086 (+) 384 WP_203387299.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16894.88 Da        Isoelectric Point: 5.9863

>NTDB_id=504713 IWH25_RS18860 WP_203387297.1 3952086..3952544(-) (ssb) [Azospira restricta strain DSM 18626]
MASVNKVILVGNLGADPETRYLPSGDPVTNIRLATTETWKDKQSGERKEATEWHRVVLFRRLAEIAGQYLKKGSQVYIEG
RIRTRKWQDKDGQERYTTEIEAEEMKMLGGRQGQGEPSSYGGGEAPAPSYGGAKPSAAKKPSFDDMDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=504713 IWH25_RS18860 WP_203387297.1 3952086..3952544(-) (ssb) [Azospira restricta strain DSM 18626]
ATGGCTTCGGTCAACAAAGTGATCCTCGTCGGCAACCTCGGCGCCGACCCCGAAACCCGCTACCTGCCGAGCGGCGACCC
GGTGACCAACATCCGCCTGGCGACGACCGAAACCTGGAAGGACAAGCAGAGCGGCGAGCGCAAGGAGGCCACCGAATGGC
ACCGCGTCGTGCTCTTCCGCCGCCTCGCCGAGATCGCCGGCCAGTACCTGAAGAAGGGCTCGCAGGTCTATATCGAGGGC
CGCATCCGCACCCGCAAGTGGCAGGACAAGGACGGCCAGGAGCGCTACACGACCGAGATCGAGGCGGAAGAGATGAAGAT
GCTCGGTGGCCGCCAGGGCCAGGGCGAGCCGTCCTCGTACGGCGGCGGCGAGGCGCCGGCCCCGTCCTACGGCGGCGCCA
AGCCGAGCGCGGCGAAGAAGCCGAGCTTCGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.612
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.579
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.566
  ssb Neisseria meningitidis MC58

48.276

100

0.553