Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   S70_RS05715 Genome accession   NC_017731
Coordinates   1223440..1224507 (-) Length   355 a.a.
NCBI ID   WP_014656658.1    Uniprot ID   A0A140NIV2
Organism   Providencia stuartii MRSN 2154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1218440..1229507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S70_RS05705 (S70_05850) csrA 1219945..1220130 (-) 186 WP_004264815.1 carbon storage regulator CsrA -
  S70_RS05710 (S70_05855) alaS 1220358..1222988 (-) 2631 WP_014656657.1 alanine--tRNA ligase -
  S70_RS05715 (S70_05860) recA 1223440..1224507 (-) 1068 WP_014656658.1 recombinase RecA Machinery gene
  S70_RS05720 (S70_05865) pncC 1224614..1225117 (-) 504 WP_014656659.1 nicotinamide-nucleotide amidase -
  S70_RS05725 (S70_05870) lplT 1225140..1226330 (-) 1191 WP_004923175.1 lysophospholipid transporter LplT -
  S70_RS05730 (S70_05875) aas 1226335..1228479 (-) 2145 WP_014656660.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  S70_RS05735 (S70_05880) aroL 1228591..1229088 (-) 498 WP_004923298.1 shikimate kinase AroL -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 38288.66 Da        Isoelectric Point: 4.8985

>NTDB_id=50409 S70_RS05715 WP_014656658.1 1223440..1224507(-) (recA) [Providencia stuartii MRSN 2154]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANATTYLKEHREIAEEL
DKKLREMLLTHTGEFSSAAADYISETDEDETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=50409 S70_RS05715 WP_014656658.1 1223440..1224507(-) (recA) [Providencia stuartii MRSN 2154]
ATGGCTATCGATGAAAACAAACAAAAGGCATTAGCTGCAGCGTTAGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCTAT
CATGCGTCTTGGTGAAGACCGCTCAATGGACGTAGAAACTATTTCAACAGGCTCTTTATCTCTTGATGTGGCTTTAGGTG
CAGGTGGTTTGCCATTAGGGCGTATTGTCGAAATTTATGGTCCTGAATCTTCTGGTAAAACAACACTCACGTTGCAAGTT
ATTGCAGCAGCACAACGTAGCGGAAAAACCTGTGCATTTATCGACGCTGAACATGCGCTAGATCCAATCTATGCGAAAAA
ACTGGGTGTTGATATCGATAACCTTCTATGTTCTCAACCTGATACTGGTGAGCAAGCATTAGAGATTTGTGATGCACTGA
CGCGTTCAGGCGCTGTTGATGTCATTATCGTTGACTCCGTAGCCGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATC
GGTGACTCACACATGGGCTTAGCGGCTCGTATGATGAGCCAAGCGATGCGTAAATTAGCGGGTAACTTAAAGAACTCGAA
TACACTTTTAATCTTCATTAACCAAATCCGTATGAAGATCGGCGTTATGTTTGGTAACCCTGAAACCACTACAGGTGGTA
ACGCTCTGAAATTCTACGCTTCTGTTCGTTTAGATATTCGCCGTATCGGTGCTGTCAAAAATGGTGAAGAAATTGTAGGT
AGCGAAACACGCGTTAAAGTTGTTAAAAACAAAGTTGCAGCGCCATTTAAACAGGCTGAATTCCAAATCCTTTATGGTGA
AGGCATTAACACCTATGGTGAATTGATCGACTTAGGTGTTAAACATAAGTTGATTGAAAAAGCCGGTGCTTGGTATAGCT
ATAACGGTGATAAAATCGGTCAAGGTAAAGCAAACGCGACAACGTATCTGAAAGAGCATCGGGAAATTGCAGAAGAACTC
GATAAAAAATTGCGTGAAATGCTTTTAACGCATACTGGTGAGTTTAGCAGCGCAGCGGCTGACTATATCAGTGAAACTGA
TGAAGATGAGACACCAGAAGAATTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A140NIV2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.726

100

0.814

  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.726

100

0.814

  recA Pseudomonas stutzeri DSM 10701

71.965

97.465

0.701

  recA Acinetobacter baylyi ADP1

69.602

99.155

0.69

  recA Acinetobacter baumannii D1279779

74.085

92.394

0.685

  recA Glaesserella parasuis strain SC1401

68.946

98.873

0.682

  recA Neisseria gonorrhoeae MS11

64.986

100

0.654

  recA Neisseria gonorrhoeae MS11

64.986

100

0.654

  recA Neisseria gonorrhoeae strain FA1090

64.986

100

0.654

  recA Ralstonia pseudosolanacearum GMI1000

67.47

93.521

0.631

  recA Streptococcus pneumoniae TIGR4

59.659

99.155

0.592

  recA Streptococcus pneumoniae Rx1

59.659

99.155

0.592

  recA Streptococcus pneumoniae D39

59.659

99.155

0.592

  recA Streptococcus pneumoniae R6

59.659

99.155

0.592

  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583

  recA Helicobacter pylori 26695

62.997

92.113

0.58

  recA Streptococcus mitis NCTC 12261

58.405

98.873

0.577

  recA Streptococcus mitis SK321

58.671

97.465

0.572

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

92.113

0.569

  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.549

0.561

  recA Streptococcus mutans UA159

61.231

91.549

0.561

  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.423

0.561

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.521

0.558

  recA Streptococcus pyogenes NZ131

60.923

91.549

0.558

  recA Lactococcus lactis subsp. cremoris KW2

61.3

90.986

0.558

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.502

90.423

0.538


Multiple sequence alignment