Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IUJ45_RS06790 Genome accession   NZ_CP064367
Coordinates   1334693..1335880 (+) Length   395 a.a.
NCBI ID   WP_002245787.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1329693..1340880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS06775 (IUJ45_06875) - 1330613..1331212 (+) 600 WP_002216221.1 DUF4390 domain-containing protein -
  IUJ45_RS06780 (IUJ45_06880) - 1331212..1333332 (+) 2121 WP_002245785.1 PAS domain-containing sensor histidine kinase -
  IUJ45_RS06785 (IUJ45_06885) - 1333325..1334602 (+) 1278 WP_002245786.1 sigma-54 dependent transcriptional regulator -
  IUJ45_RS06790 (IUJ45_06890) dprA 1334693..1335880 (+) 1188 WP_002245787.1 DNA-processing protein DprA Machinery gene
  IUJ45_RS06795 (IUJ45_06895) - 1335906..1336367 (+) 462 WP_002215351.1 DUF494 domain-containing protein -
  IUJ45_RS06800 (IUJ45_06900) topA 1336439..1338745 (+) 2307 WP_002245788.1 type I DNA topoisomerase -
  IUJ45_RS06805 (IUJ45_06905) - 1338818..1339513 (-) 696 WP_002245789.1 hypothetical protein -
  IUJ45_RS06810 (IUJ45_06910) - 1339533..1340084 (-) 552 WP_002230190.1 hypothetical protein -
  IUJ45_RS06815 (IUJ45_06915) - 1340203..1340583 (+) 381 WP_002239423.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 42042.22 Da        Isoelectric Point: 6.1732

>NTDB_id=501179 IUJ45_RS06790 WP_002245787.1 1334693..1335880(+) (dprA) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSAPAEQVAALIRHKQALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGKSLGGQNIPVVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEAAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=501179 IUJ45_RS06790 WP_002245787.1 1334693..1335880(+) (dprA) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCCGTTTCGGCAGCGCGCAAAATGCCCTGTCCGCACCGGCGGAACAGGTGGCGGCACTGATACGGCACAAACAGGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTCTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAAGTCGTTGGGCGGGCAAAATATCCCCGTTGTGTCGGGTATGGCTTCCGGTATCGATACT
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGTATAGACCGCATTTACCCGCC
GTCCAATAAAAACCTTGCCTATGAAATCGCCGAAAAAGGATTGATTGTCAGCGAGTTTCCCATCGGTACGCGCCCGTATG
CCGGCAATTTTCCGCGCCGCAACCGCCTGATTGCCGCCCTGTCGCAAGTAACGCTGGTGGTTGAAGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAATCCGCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCAAAATTGGTGGAATGCCTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGACGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGCGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(339-388)

DNA recombination-mediator protein A (DNA_processg_A)

(79-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

96.456

100

0.965
  dprA Neisseria gonorrhoeae strain FA1090

96.203

100

0.962
  dprA Neisseria meningitidis strain C311

91.94

100

0.924
  dprA Neisseria meningitidis MC58

91.94

100

0.924
  dprA Vibrio cholerae strain A1552

37.783

100

0.38
  dprA Glaesserella parasuis strain SC1401

41.935

86.329

0.362