Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IQ680_RS07560 Genome accession   NZ_CP064266
Coordinates   1437221..1437724 (-) Length   167 a.a.
NCBI ID   WP_026592157.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1432221..1442724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS07540 rplI 1433158..1433604 (-) 447 WP_098336924.1 50S ribosomal protein L9 -
  IQ680_RS07545 - 1433601..1435574 (-) 1974 WP_243525372.1 DHH family phosphoesterase -
  IQ680_RS07550 - 1435925..1436863 (-) 939 WP_243525373.1 YybS family protein -
  IQ680_RS07555 rpsR 1436943..1437176 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  IQ680_RS07560 ssbA 1437221..1437724 (-) 504 WP_026592157.1 single-stranded DNA-binding protein Machinery gene
  IQ680_RS07565 rpsF 1437752..1438042 (-) 291 WP_098336928.1 30S ribosomal protein S6 -
  IQ680_RS07570 ychF 1438236..1439336 (-) 1101 WP_243525374.1 redox-regulated ATPase YchF -
  IQ680_RS07575 - 1439452..1439649 (-) 198 WP_000436049.1 DUF951 domain-containing protein -
  IQ680_RS07580 - 1439670..1440551 (-) 882 WP_243525375.1 mechanosensitive ion channel family protein -
  IQ680_RS07585 yyaC 1440930..1441526 (+) 597 WP_243525376.1 spore protease YyaC -
  IQ680_RS07590 - 1441547..1442398 (-) 852 WP_098336932.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18241.03 Da        Isoelectric Point: 4.9327

>NTDB_id=500400 IQ680_RS07560 WP_026592157.1 1437221..1437724(-) (ssbA) [Bacillus pseudomycoides strain N451-2]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNSGGEQRGSFNQQPSGAGYGNQGSNPFGQSSNSGNSGFTKNDDPFSNVGQPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=500400 IQ680_RS07560 WP_026592157.1 1437221..1437724(-) (ssbA) [Bacillus pseudomycoides strain N451-2]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCGGTAGC
TACTTTCACGTTAGCTGTGAATCGTGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGTCGTCTTCAAACTCGT
AATTATGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAACCGCGTAA
TAGCGGTGGGGAGCAACGCGGTTCATTCAATCAGCAACCATCAGGGGCTGGTTACGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACTCTGGATTTACAAAGAATGACGACCCATTTTCAAATGTAGGTCAACCGATTGATATT
TCGGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.512

100

0.737
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

63.473

0.413
  ssb Glaesserella parasuis strain SC1401

37.64

100

0.401
  ssb Neisseria meningitidis MC58

33.889

100

0.365
  ssb Neisseria gonorrhoeae MS11

33.889

100

0.365